Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2405g00009 ATGGAGGAGGATTTCGAGTTCCCAACTGAGGGTAACATGGAGGAGGAAGAGGATGAGATAGAGAGCCCGATTCTCAAGGTTGGGGAGGAGAAGGAGATTGGGAAGAATGGACTCAAAAAGAAGCTGGTCAAGGAGGGTGAAGGATGGGAAACACCTAACACTGGAGACGAAGTTGAAGTGCATTATACTGGAACCTTGCTCGATGGAACTCAATTTGATTCTAGCCGTGACAGGAACACACCTTTCAAGTTCAAGCTTGGCCAAGGGCAAGTGATTAAGGGATGGGATGAAGGCATCAAAACCATGAAGAAGGGTGAAAATGCCATTTTCACAATACCCCCAGAGTTGGCTTATGGAGAGTCTGGGTCTCCTCCCACCATTCCCCCAAATGCAACTCTACAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTAAAGGACATATGCAAGGATGGAGGAATACTTAAGACGATAATTACTGAAGGGGAAAAATGGGAGAATCCTAAGGACCTCGATGAAGTGTTTGTTAAGTATGTAGCTCGGCTTGAAGACGGGAAAGTCATTTCAAAATCTGATGGGGTGGAGTTCACTGTGGAAGAGGGGTATTTCTGTCCTGCTTTGGCCAAGGCAGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGACCGTGAAGCCACAATATGCATTTGGTGTCAGTGGAAGGCCAGCATCAGGAGGTGAAGGTGCTGTTCCTCCAAATGCTTCGCTCCAAATAGATCTTGAATTAGTCTCGTGGAAGACCGTGTCTGATATTACCAAGGATAGGAAGGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTGGTTCAAGTGAAACTTATTGGCAAGCTGCAAGATGGGACTGTCTTCCTCAAGAAGGGTTACGATGATGAACAGCCATTTGAGTTCAAAATTGATGAAGATGGACTCGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCATTGGTGATCATACATCCTGAATATGCTTTCGGACCAAATGGGTCCACACAGGAATTGGCTACTATTCCTCCCAATACCACTGTGTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAAAAGGAATCGTGGGACCTTAATACGCAAGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGAAGAAGGAAATGCATTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAATAGATATGAAAAGGCCATAAGATTTATCGAGTATGATTCCTCCTTAAGTGATGAGGAGAAACAACAGACCAAAGCATTGAAAATAACATGCAATCTCAATAATGCAGCCTGTAAGTTAAAACTCAAGGACTACAAACAGGCTGAGAAGTTGTGCACAAAGGTGTTGGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGGAGAGCGCAGGCATATATTCATCTTGTGGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAACCAGATAATAGGGATGTGAAGATCGAGTATAAAATTTTGAAGGAAAAAGTGCGAGAATACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAACAAACTAGAACAAACAAGAACTCCAGCAGCAGAAAAGGAGCCTGTGCCAATGGCTATTGACAGTAAAGCTTAA 1698 0.4329 MEEDFEFPTEGNMEEEEDEIESPILKVGEEKEIGKNGLKKKLVKEGEGWETPNTGDEVEVHYTGTLLDGTQFDSSRDRNTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKTIITEGEKWENPKDLDEVFVKYVARLEDGKVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLTVKPQYAFGVSGRPASGGEGAVPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFLKKGYDDEQPFEFKIDEDGLDRAVKNMKKGEIALVIIHPEYAFGPNGSTQELATIPPNTTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYERASNRYEKAIRFIEYDSSLSDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIHLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKEKVREYNKKDAQFYGSIFAKMNKLEQTRTPAAEKEPVPMAIDSKA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2405g00009 565 FunFam Peptidylprolyl isomerase 147 260 - -
Gabi2405g00009 565 SUPERFAMILY TPR-like 382 541 IPR011990 GO:0005515
Gabi2405g00009 565 PANTHER PEPTIDYLPROLYL ISOMERASE 14 145 - -
Gabi2405g00009 565 FunFam Peptidylprolyl isomerase 381 536 - -
Gabi2405g00009 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 376 IPR001179 GO:0003755
Gabi2405g00009 565 SMART tpr_5 476 509 IPR019734 GO:0005515
Gabi2405g00009 565 SMART tpr_5 442 475 IPR019734 GO:0005515
Gabi2405g00009 565 SMART tpr_5 393 426 IPR019734 GO:0005515
Gabi2405g00009 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Gabi2405g00009 565 Gene3D - 261 378 IPR046357 GO:0003755
Gabi2405g00009 565 FunFam Peptidylprolyl isomerase 28 146 - -
Gabi2405g00009 565 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Gabi2405g00009 565 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2405g00009 565 Pfam Tetratricopeptide repeat 453 508 - -
Gabi2405g00009 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Gabi2405g00009 565 Coils Coil 509 529 - -
Gabi2405g00009 565 Gene3D Tetratricopeptide repeat domain 379 536 IPR011990 GO:0005515
Gabi2405g00009 565 SUPERFAMILY FKBP-like 26 147 - -
Gabi2405g00009 565 Gene3D - 30 145 IPR046357 GO:0003755
Gabi2405g00009 565 SUPERFAMILY FKBP-like 262 393 - -
Gabi2405g00009 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 373 IPR001179 GO:0003755
Gabi2405g00009 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 140 IPR001179 GO:0003755
Gabi2405g00009 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 166 257 IPR001179 GO:0003755
Gabi2405g00009 565 SUPERFAMILY FKBP-like 147 263 - -
Gabi2405g00009 565 Gene3D - 146 260 IPR046357 GO:0003755
Gabi2405g00009 565 FunFam Peptidylprolyl isomerase 261 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2405g00009 Gabi-Chr2405 143127 146893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2405g00009 18 565 Calmodulin-binding Proteins AT5G48570 74.820 0.0 839