Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2405g00008 ATGGAGGAGGATTTCGAGTTCCCAACTGAGGGTAACATGGAGGAGGAAGAGGATGAGATAGAGAGCCCGATTCTCAAGGTTGGGGAGGAGAAGGAGATTGGGAAGAATGGACTCAAAAAGAAGCTGGTCAAGGAGGGTGAAGGATGGGAAACACCTAACACTGGAGACGAAGTTGAAGTGCATTATACTGGAACCTTGCTCGATGGAACTCAATTTGATTCTAGCCGTGACAGGAACACACCTTTCAAGTTCAAGCTTGGCCAAGGGCAAGTGATTAAGGGATGGGATGAAGGCATCAAAACCATGAAGAAGGGTGAAAATGCCATTTTCACAATACCCCCAGAGTTGGCTTATGGAGAGTCTGGGTCTCCTCCCACCATTCCCCCAAATGCAACTCTACAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTAAAGGACATATGCAAGGATGGAGGAATACTTAAGACGATAATTACTGAAGGGGAAAAATGGGAGAATCCTAAGGACCTCGATGAAGTGTTTGTTAAGTATGTAGCTCGGCTTGAAGACGGGAAAGTCATTTCAAAATCTGATGGGGTGGAGTTCACTGTGGAAGAGGGGTATTTCTGTCCTGCTTTGGCCAAGGCAGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGACCGTGAAGCCACAATATGCATTTGGTGTCAGTGGAAGGCCAGCATCAGGAGGTGAAGGTGCTGTTCCTCCAAATGCTTCGCTCCAAATAGATCTTGAATTAGTCTCGTGGAAGACCGTGTCTGATATTACCAAGGATAGGAAGGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTGGTTCAAGTGAAACTTATTGGCAAGCTGCAAGATGGGACTGTCTTCCTCAAGAAGGGTTACGATGATGAACAGCCATTTGAGTTCAAAATTGATGAAGTTGTATGTGGGCTGCACCATGTCGAGCAAGTAATAGATGGACTCGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCATTGGTGATCATACATCCTGAATATGCTTTCGGACCAAATGGGTCCACACAGGAATTGGCTACTATTCCTCCCAATACCACTGTGTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAAAAGGAATCGTGGGACCTTAATACGCAAGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGAAGAAGGAAATGCATTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAATAGATATGAAAAGGCCATAAGATTTATCGAGTATGATTCCTCCTTAAGTGATGAGGAGAAACAACAGACCAAAGCATTGAAAATAACATGCAATCTCAATAATGCAGCCTGTAAGTTAAAACTCAAGGACTACAAACAGGCTGAGAAGTTGTGCACAAAGGTGTTGGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGGAGAGCGCAGGCATATATTCATCTTGTGGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAACCAGATAATAGGGATGTGAAGATCGAGTATAAAATTTTGAAGGAAAAAGTGCGAGAATACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAACAAACTAGAACAAACAAGAACTCCAGCAGCAGAAAAGGAGCCTGTGCCAATGGCTATTGACAGTAAAGCTTAA 1734 0.4337 MEEDFEFPTEGNMEEEEDEIESPILKVGEEKEIGKNGLKKKLVKEGEGWETPNTGDEVEVHYTGTLLDGTQFDSSRDRNTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKTIITEGEKWENPKDLDEVFVKYVARLEDGKVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLTVKPQYAFGVSGRPASGGEGAVPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFLKKGYDDEQPFEFKIDEVVCGLHHVEQVIDGLDRAVKNMKKGEIALVIIHPEYAFGPNGSTQELATIPPNTTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYERASNRYEKAIRFIEYDSSLSDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIHLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKEKVREYNKKDAQFYGSIFAKMNKLEQTRTPAAEKEPVPMAIDSKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2405g00008 577 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
Gabi2405g00008 577 SMART tpr_5 488 521 IPR019734 GO:0005515
Gabi2405g00008 577 SMART tpr_5 454 487 IPR019734 GO:0005515
Gabi2405g00008 577 SMART tpr_5 405 438 IPR019734 GO:0005515
Gabi2405g00008 577 Gene3D - 30 145 IPR046357 GO:0003755
Gabi2405g00008 577 Gene3D - 146 260 IPR046357 GO:0003755
Gabi2405g00008 577 SUPERFAMILY FKBP-like 26 154 - -
Gabi2405g00008 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Gabi2405g00008 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 140 IPR001179 GO:0003755
Gabi2405g00008 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 166 257 IPR001179 GO:0003755
Gabi2405g00008 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 385 IPR001179 GO:0003755
Gabi2405g00008 577 SUPERFAMILY FKBP-like 263 405 - -
Gabi2405g00008 577 FunFam Peptidylprolyl isomerase 147 260 - -
Gabi2405g00008 577 SUPERFAMILY TPR-like 394 553 IPR011990 GO:0005515
Gabi2405g00008 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 388 IPR001179 GO:0003755
Gabi2405g00008 577 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2405g00008 577 Pfam Tetratricopeptide repeat 465 520 - -
Gabi2405g00008 577 Gene3D - 261 390 IPR046357 GO:0003755
Gabi2405g00008 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Gabi2405g00008 577 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 151 263 - -
Gabi2405g00008 577 Coils Coil 521 541 - -
Gabi2405g00008 577 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Gabi2405g00008 577 FunFam Peptidylprolyl isomerase 28 146 - -
Gabi2405g00008 577 FunFam Peptidylprolyl isomerase 393 548 - -
Gabi2405g00008 577 FunFam Peptidylprolyl isomerase 261 390 - -
Gabi2405g00008 577 SUPERFAMILY FKBP-like 147 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2405g00008 Gabi-Chr2405 143127 146894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2405g00008 18 577 Calmodulin-binding Proteins AT5G48570 74.468 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2405g00008 K09571 - gmx:100810243 1003.05