Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2405g00004 ATGGATAACCAAGATCAACGAAGAACTCACACTCTAGGGCACGAGAGTCATGGAGTTCATGTGTGTCACAAATGTGGATGGTCCTTCCCGAATCCGCATCCAAGTGCCAAACACAGGCGCGCTCACAAGAAGATCTGTGGAACCATCGAAGGTTACAAACTGTGTGTAGCTGAGGGACAGAACCGTTTGAACGGTTCGGATGATGAACATGTTTCTGACGATGATCACAAAACACCAGGTCCAAACACTTTGGATACTGGCAACAATGAGAAGGGTAATGATGGAAATGGAGAGATATTAATTAGATCAGAAGATGAGGTTTTTTCAGATGCAGTTGCAGACTTTTCGGATAGTGGACTAAATCCAGGAATTAAGGAACGGTTACAAGAAGGTAGTTTGGACTCAGGTACCAATGTGGAAAGCGTTGACATAAAAGATCCAAAATTTTCAAGGTCTTCCGAAGACAATGGTTTTAATGCTGCAGATGTGAGTCAGTTAAATGTCAAGTCAAGCGATGATGTCCAAATTCAAAATCATAAAATTGTGCAAAGTGAAAGTGTTGACATGGGAAACACAGTGGAGTTGCAATGTCAATTGTCAGACTCTATTGTGGATCCGATATCAAGTTCAGTTGCAGATTTGGGGACTGGAGAATCAACTATTGTGGATAGTGATGATTTTTTTGTTTTGTCAAGTGACTCATATCCCAGCAAAACTGAACTTATGCCAGACGAATTGCCAGAAAAAAATTTCCGTGCTGGTGAAAATGTGACAGATTGCAGTTTGATATCTGTTGCAAAGGAGACTATTTTGAAAGGAAAGGAGGAGATTAAATCAGATAGAGATGTGGTTGAAATTGTGGACTCATCTGATAACATTGTAGGTGAAACATGTGAAGGAACTTCTAAAAGAGCTGTTACTGATGAAATTTCCTTGGATCATCAAGTGGGTCATGGAGCTGTTAATCTGAAGGAAAAGAACGGTGCTGAGTTCCTTTCTTTGCTGCCCCAAGATGACCCTCTCGAGTTAAACTCTGTTGTAATCACAAACGATGCTCTGGAAGAGTCCGCACATGTGGTAGAGTTTACTACTTCTAGTGATGTCAAGATTTTGCAGGAAAAGGAAGAAGGACATGTTAATGTTGATCAACTTCCCGCATGTGATGATAGACCTGATGTAGCACATCCTCAGACTGAGTATGGAGATATTAAAGATCACGAAGGAGTGGCATCCCAAAGTCCTTTAAGCCTACACTCATCTGATTCTTTGAAACACGAGGAAGATGACCTCAAGACTACTGTTAATATGGAAAATATTTTTCATTTCAACACAAGCCAATTGAATGAAAAAGGTGGTGTCCTCTCTCCAGATATGCATGTTATGGATAGTAACATGAAGAAGGGGCTGGTCAACAGTGAGCCTATGGCTGAAGAAATGCATGCTGAACAATACACTGAAGTTTCTCCTTTCAAGCTCACAGTTGAAAGTTATCAAGGATCAAATGAAATCGGAGTGTCTATGAATGCGATGAAAACTGAAATGAATGAGAATCATATGGTTCACTTTTCTGAAGAGCAGGCACCTGATGATGTTCGTAAAAATTCACAACAGATAAGTTTACCAGAAGTTAGTTTAATGTCCTCATCAAACGACAGTCAGAGGAATGCATCCTTTGGGTCTGCCACCAGTGAAACAACTAGTGTAATTATCATAGATAATATAAGTCATCATGAGGAAAACATAAATGAAATAAATGATGTAACAGTAGATGTCGAGGATGTAGGAGGTAATGTAGAAAATGATATTGAAATTATATTGAAAGATCTTCATCCCAGTGACCTCTTGCAATCTGAAGTCAAGCAATCAAGTGACTCATTCAAGAGTGAGGATGCTGGTGAAATGAGTAAAATTGAACAATGTGATATTATTGATGCTCAATGTAGGGAAAGGCCCATCGTGAGAGATACTTCATCGCCTAATACTGCAAGCAGTCAGTTTGAAAGCCCAGTTATTTCAGAGGTTGTACTTGATGGGCCTGGAAGAAAGTCGAAAGGTACAGAGTGCACTAAAGTAGAAACACTATCAGGTGCCCAGGAAGACATAAAAGAAGATGAAATCAATACCAACATTAAACTAAATGAGGAATGTAGCAGATCTGTTGGTACTTCCGCTGACTCACTTCAAGCGCAAGAAGAAGAATTATTAGTGAAGGCTGCAGAAGACCCTGCTAGGAAGTACACATCACTTTCTTCTTTAAATACTGAGCCTTCTGCTCAACATGATTCTGCTGCTGAAGATCATCCAGGAGGAGAGCCTGGTCGGGATGGCATTACCACTGTGCCTGTTCAAGATCAAAGTGGTAATAATTTGGTTAAATATAGTTCATCCGGGATTGATGCTTCACTTGACTCTGGTAGCCGGTGTGACAGTTTGGAAGGCAACTGGGGCTCTGTTTCAGTTCTCTCAATGCTATCCGATGCACCAGCTGTTATTGATGCGGAAGCTTTACCATCAACTGGTTTGCTGGCTTCAACAGAAGCAGGGAAATCAAACTTGAACAACCTAAAAGCTACATCTGAGAAACAGCAGTTTGGAAAATCAGAAATGTTTGAACAACCATCTTTCATGACATTGATTGAACCTAGACCCATGGTTAGCCCTAAAGCTGCTGCTTCCGAAGCTCAGGAGGGACAGAACTCACGACAGCCTTATTCTTCCACTTCTCAGGCTGGTTGGTTTCCCACTCTAACTCAGGTTATGAATGAGTCTCAAGGGAGAAAGAAGAGTGAAGAAATAATAGCCAAGGTAACAAACTGGAGCACTAGTAAGGAGCACACACCTCTGAAGAGCCTGTTGGGTGAGGCTGCACATAGCAACAAGGCAAAATCTCCCAAAATGGAAGAAAATTCAGTGAATCAGAAGAATGGTAAAGTTCCAGAGAATAATGGTTCTGGATTGACAACTGTAAACTCAATTCTGTGTCCTGAGTCCCCTGCAGCTCAAGTTGTGAAAGGAGATGCTGCAAAAGAATGGGACTCTCCAGCAAGATATCCTGCAGACATCAAGAGAGAAAAAAGGAAAGTAAAGAGCAGACCATTCTGGATTCATTTGGTATGCTGCTCAGTAGTGGATCCTCAGAGAAGATAG 3147 0.4115 MDNQDQRRTHTLGHESHGVHVCHKCGWSFPNPHPSAKHRRAHKKICGTIEGYKLCVAEGQNRLNGSDDEHVSDDDHKTPGPNTLDTGNNEKGNDGNGEILIRSEDEVFSDAVADFSDSGLNPGIKERLQEGSLDSGTNVESVDIKDPKFSRSSEDNGFNAADVSQLNVKSSDDVQIQNHKIVQSESVDMGNTVELQCQLSDSIVDPISSSVADLGTGESTIVDSDDFFVLSSDSYPSKTELMPDELPEKNFRAGENVTDCSLISVAKETILKGKEEIKSDRDVVEIVDSSDNIVGETCEGTSKRAVTDEISLDHQVGHGAVNLKEKNGAEFLSLLPQDDPLELNSVVITNDALEESAHVVEFTTSSDVKILQEKEEGHVNVDQLPACDDRPDVAHPQTEYGDIKDHEGVASQSPLSLHSSDSLKHEEDDLKTTVNMENIFHFNTSQLNEKGGVLSPDMHVMDSNMKKGLVNSEPMAEEMHAEQYTEVSPFKLTVESYQGSNEIGVSMNAMKTEMNENHMVHFSEEQAPDDVRKNSQQISLPEVSLMSSSNDSQRNASFGSATSETTSVIIIDNISHHEENINEINDVTVDVEDVGGNVENDIEIILKDLHPSDLLQSEVKQSSDSFKSEDAGEMSKIEQCDIIDAQCRERPIVRDTSSPNTASSQFESPVISEVVLDGPGRKSKGTECTKVETLSGAQEDIKEDEINTNIKLNEECSRSVGTSADSLQAQEEELLVKAAEDPARKYTSLSSLNTEPSAQHDSAAEDHPGGEPGRDGITTVPVQDQSGNNLVKYSSSGIDASLDSGSRCDSLEGNWGSVSVLSMLSDAPAVIDAEALPSTGLLASTEAGKSNLNNLKATSEKQQFGKSEMFEQPSFMTLIEPRPMVSPKAAASEAQEGQNSRQPYSSTSQAGWFPTLTQVMNESQGRKKSEEIIAKVTNWSTSKEHTPLKSLLGEAAHSNKAKSPKMEENSVNQKNGKVPENNGSGLTTVNSILCPESPAAQVVKGDAAKEWDSPARYPADIKREKRKVKSRPFWIHLVCCSVVDPQRR 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 885 912 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 957 991 - -
Gabi2405g00004 1048 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 1042 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 892 912 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 381 402 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 63 97 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 965 991 - -
Gabi2405g00004 1048 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 63 80 - -
Gabi2405g00004 1048 MobiDBLite consensus disorder prediction 749 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2405g00004 Gabi-Chr2405 74494 80368 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2405g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2405g00004 - - gmx:100820280 1311.59