Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2403g00003 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAACAGACAATTGAACGATACCGCAGGCATACAAGGGATAATACTCCAACAGCATTCAGATCAGATGAACAAAATATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGACAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCATGGAACAAATTAAGCAACTAAAAGAAAGGGAAAATGTCCTAGTTACTGAAAATTCCAGGCTTTCTAAGAAGCATGGTAACTTTCCACAGCCAGCAACAAAGGATCAGAGAGAACATCAACCTCAACCCTATGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATCCAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTACTTGA 672 0.4271 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRHTRDNTPTAFRSDEQNMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLDRSVSNVRARKTQIFMEQIKQLKERENVLVTENSRLSKKHGNFPQPATKDQREHQPQPYAESSPSSDVETELFIGLPDPRTRCGASFLRST 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2403g00003 223 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Gabi2403g00003 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Gabi2403g00003 223 Coils Coil 151 171 - -
Gabi2403g00003 223 MobiDBLite consensus disorder prediction 180 201 - -
Gabi2403g00003 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2403g00003 223 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2403g00003 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Gabi2403g00003 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 Coils Coil 122 142 - -
Gabi2403g00003 223 MobiDBLite consensus disorder prediction 164 223 - -
Gabi2403g00003 223 FunFam MADS-box protein SOC1 14 96 - -
Gabi2403g00003 223 Coils Coil 81 108 - -
Gabi2403g00003 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2403g00003 223 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2403g00003 Gabi-Chr2403 5680 32912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2403g00003 1 157 MADS-box Gene Family AT2G45660 76.433 1.05e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2403g00003 K-box 6.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2403g00003 - - gmx:100807963 311.227