Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2403g00003 | ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAACAGACAATTGAACGATACCGCAGGCATACAAGGGATAATACTCCAACAGCATTCAGATCAGATGAACAAAATATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGACAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCATGGAACAAATTAAGCAACTAAAAGAAAGGGAAAATGTCCTAGTTACTGAAAATTCCAGGCTTTCTAAGAAGCATGGTAACTTTCCACAGCCAGCAACAAAGGATCAGAGAGAACATCAACCTCAACCCTATGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATCCAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTACTTGA | 672 | 0.4271 | MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRHTRDNTPTAFRSDEQNMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLDRSVSNVRARKTQIFMEQIKQLKERENVLVTENSRLSKKHGNFPQPATKDQREHQPQPYAESSPSSDVETELFIGLPDPRTRCGASFLRST | 223 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2403g00003 | 223 | Gene3D | - | 14 | 100 | IPR036879 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | CDD | MADS_MEF2_like | 3 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Gabi2403g00003 | 223 | Coils | Coil | 151 | 171 | - | - | |
Gabi2403g00003 | 223 | MobiDBLite | consensus disorder prediction | 180 | 201 | - | - | |
Gabi2403g00003 | 223 | Pfam | K-box region | 84 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gabi2403g00003 | 223 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gabi2403g00003 | 223 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 180 | - | - | |
Gabi2403g00003 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | Coils | Coil | 122 | 142 | - | - | |
Gabi2403g00003 | 223 | MobiDBLite | consensus disorder prediction | 164 | 223 | - | - | |
Gabi2403g00003 | 223 | FunFam | MADS-box protein SOC1 | 14 | 96 | - | - | |
Gabi2403g00003 | 223 | Coils | Coil | 81 | 108 | - | - | |
Gabi2403g00003 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi2403g00003 | 223 | SUPERFAMILY | SRF-like | 3 | 83 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2403g00003 | Gabi-Chr2403 | 5680 | 32912 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2403g00003 | 1 | 157 | MADS-box Gene Family | AT2G45660 | 76.433 | 1.05e-83 | 244 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Gabi2403g00003 | K-box | 6.7e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2403g00003 | - | - | gmx:100807963 | 311.227 |