Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2403g00001 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAACAGACAATTGAACGATACCGCAGGCATACAAGGGATAATACTCCAACAGCATTCAGATCAGATGAACAAAATATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGACAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCATGGAACAAATTAAGCAACTAAAAGAAAGGCATGGTAACTTTCCACAGCCAGCAACAAAGGATCAGAGAGAACATCAACCTCAACCCTATGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATCCAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTACTTGA 630 0.4317 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRHTRDNTPTAFRSDEQNMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLDRSVSNVRARKTQIFMEQIKQLKERHGNFPQPATKDQREHQPQPYAESSPSSDVETELFIGLPDPRTRCGASFLRST 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2403g00001 209 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Gabi2403g00001 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Gabi2403g00001 209 MobiDBLite consensus disorder prediction 166 187 - -
Gabi2403g00001 209 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2403g00001 209 FunFam MADS-box protein SOC1 14 96 - -
Gabi2403g00001 209 Pfam K-box region 84 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2403g00001 209 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Gabi2403g00001 209 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Gabi2403g00001 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 MobiDBLite consensus disorder prediction 159 209 - -
Gabi2403g00001 209 Coils Coil 122 142 - -
Gabi2403g00001 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2403g00001 209 Coils Coil 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2403g00001 Gabi-Chr2403 5680 33180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2403g00001 1 157 MADS-box Gene Family AT2G45660 76.433 1.10e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2403g00001 K-box 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2403g00001 - - gmx:100807963 288.115