Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00030 ATGGGTTGCTGCTTTAGTGCCAAGATCAAAGCCGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAGCAAAGAAGAGGATGGCTTGAGTGGTTTAAGCAGCAAGGTCTCCACTCCCTCTGTGCCTCAAACTCCTCGGACAGAGGGTGAGATCTTGAAATCCTCCAATATGAAGAGCTTCACCTTCAGTGAGCTTAGAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTATTTAAGGGATGGATTGATGAACAATCACTTGTACCAGTTAGACCAGGGACTGGAATGATCATTGCTGTTAAGAGGCTTAACCAAGAAGGTTTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAACTGCATCATCCTAATCTCGTGAAGTTGATCGGTTTTTGCTTAGAGGATGACCATAGGCTTTTGGTATATGAGTTTCTGCCCAAGGGGAGTTTGGATAATCATTTATTTAGGAGAGCTTCTCACTTTCAACCGCTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTCAAAACTTCAAATATATTGCTTGATTCGAACTATACTGCAAAACTTTCGGATTTTGGCTTGGCAAAGGATGGACCGGTTGGTGATAAGAGTCATGTCTCTACAAGGGTAATGGGCACTTATGGATATGCTGCTCCTGAATATATGGCCACAGGACACTTGACAAAAAAGAGTGATGTATACAGCTTTGGAGTTGTTCTCCTTGAAATTATGTCTGGTAAACGTGCATTGGACAGCAATAGGCCATCTGGGGAGCACAATTTGATTGAATGGGCCAAACCTTACCTCAACAGCAAAAGGAGGATCTTCCAAGTTATGGATGCTCGAATTGAAGGCCAATACACATTGCGTCAAGCAATGAAAGTAGCTAACCTTGCAATTCAATGTCTCTCTGTGGAACCTAGATTTAGACCAAAAATGGATGAGGTGGTAAGAGTATTGGAGGAGCTTCTGGATTCTGATGACACAGTTGCTGCAGGAATGGGAACCTCTCGAGATCAAACAGCCAAAAGGAATGGTCATAGCTCAAGGACCAATGTCCCTAAACGACATAGAAGTAAACATGAAACATCGTACCAGTAA 1209 0.4359 MGCCFSAKIKAESPPRNGLSSKDGSKEEDGLSGLSSKVSTPSVPQTPRTEGEILKSSNMKSFTFSELRTATRNFRPDSVVGEGGFGCVFKGWIDEQSLVPVRPGTGMIIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGFCLEDDHRLLVYEFLPKGSLDNHLFRRASHFQPLSWNIRMKVALDAAKGLAFLHSDEAKVIYRDFKTSNILLDSNYTAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTLRQAMKVANLAIQCLSVEPRFRPKMDEVVRVLEELLDSDDTVAAGMGTSRDQTAKRNGHSSRTNVPKRHRSKHETSYQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00030 402 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Gabi2401g00030 402 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Gabi2401g00030 402 MobiDBLite consensus disorder prediction 32 55 - -
Gabi2401g00030 402 MobiDBLite consensus disorder prediction 369 384 - -
Gabi2401g00030 402 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Gabi2401g00030 402 PANTHER OS01G0588500 PROTEIN-RELATED 40 359 - -
Gabi2401g00030 402 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Gabi2401g00030 402 CDD STKc_IRAK 80 359 - -
Gabi2401g00030 402 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Gabi2401g00030 402 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Gabi2401g00030 402 SUPERFAMILY Protein kinase-like (PK-like) 58 362 IPR011009 -
Gabi2401g00030 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gabi2401g00030 402 ProSiteProfiles Protein kinase domain profile. 74 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2401g00030 402 MobiDBLite consensus disorder prediction 366 402 - -
Gabi2401g00030 402 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00030 Gabi-Chr2401 321622 324770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00030 1 356 Glycoside Hydrolase AT3G07070 45.380 6.83e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2401g00030 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00030 - - gmx:100775335 712.605