Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00028 ATGCGGAGGAACAGTCCAGCATACTACAGTCCTCCTCGGAGAGGCTACGGCGGTAGAGGGCCTAGTAGGAGGGGATACGGTGGAGGCAGGCGCAGGGAAAGCAATAATGGAAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCAGATCTGAAGAACTTCGTGTCCCCTTCGAGCGATTTGGACCTGTTCGTGATGTCTACATACCAAAGGACTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGACGCTGATGATGCCTCGGATGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCCGTTGTCGTGGCAGCAGAGACCAGAAAAAGACCAGAGGAGATGCGTCAAAGGACTACTAGGGTCAGAGGACCAGGGAGCTATGGGGGGCATAGGTCTTCTTATTATGGTCGATCTCGATCTCGCTCAATCACCAGATCACGCTCACCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGTCCTTTTCTCCTGCCCCAAGGCGGCAAAGTGACTACTCTGTTTCCCCTAGAAGGCAAGCAGAGCATCCTAGATCACCCAGAAGTCCTCCTGGGGAGCATGTGGAGCGAGATGGTGATCATAAGCGCAGGTCATATTCTCCAGCTTATGGCAATGGTGCTGATCAGAATCAAAGCAATGGATATGCCGATAAATCTATATACAAGTCTGAGGCTGATCGAGGCCAGTGGAAGTCATCCCTACGTAGAGCATCAAGATCACCCCTTGGTTCTAGATCAAGATCTCCTGATTTGTCACCTAGACGTGGAAGATGA 825 0.4994 MRRNSPAYYSPPRRGYGGRGPSRRGYGGGRRRESNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDADDASDAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTTRVRGPGSYGGHRSSYYGRSRSRSITRSRSPPYHSGSRNRYRSRSFSPAPRRQSDYSVSPRRQAEHPRSPRSPPGEHVERDGDHKRRSYSPAYGNGADQNQSNGYADKSIYKSEADRGQWKSSLRRASRSPLGSRSRSPDLSPRRGR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00028 274 MobiDBLite consensus disorder prediction 220 235 - -
Gabi2401g00028 274 SUPERFAMILY RNA-binding domain, RBD 33 143 IPR035979 GO:0003676
Gabi2401g00028 274 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 30 172 - -
Gabi2401g00028 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Gabi2401g00028 274 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2401g00028 274 MobiDBLite consensus disorder prediction 142 184 - -
Gabi2401g00028 274 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 31 228 - -
Gabi2401g00028 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Gabi2401g00028 274 Gene3D - 29 152 IPR012677 -
Gabi2401g00028 274 MobiDBLite consensus disorder prediction 117 274 - -
Gabi2401g00028 274 MobiDBLite consensus disorder prediction 185 215 - -
Gabi2401g00028 274 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00028 Gabi-Chr2401 305405 309638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00028 7 99 Eukaryotic Initiation Factors Gene Family AT3G11400 36.559 1.42e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00028 K12900 - gmx:100804294 355.91