Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00027 ATGGCAATTGGGTTCATGGAGGTGCTGCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATATATTTGGTCGCATGGATCCGTATGTTCTGTTACAATACAAAGGTCAGGAGCTCAAGAGCAGTGTACTCCATGAGGGAGGCAGAAATCCTGTATGGAATGAAAAATTTGTATTCAGAGTGGAATACCCTGGATCAGGTGATCACTACAAGCTCAACCTTAAAATCATGGACAAGGACGTTTTTTCTGCAGATGACTTTGTTGGCCAGGCCATAATCCATGTGAAGGATTTATTGGTAGAAGGAGCAGAGAATGGATCAGCTGAGCTTCATCCTCGCAAGTATGTTGTTGTTCGAGCTGACCAGTCTTATTGTGGTGAAATTGAAGTTGGTATAACTTTCACCCGAAAGGAAGAGGAATATATTGACAATGACATTGGAGGATGGAAGGAAAGTGACCATTAG 462 0.4264 MAIGFMEVLLVKAKGLQETDIFGRMDPYVLLQYKGQELKSSVLHEGGRNPVWNEKFVFRVEYPGSGDHYKLNLKIMDKDVFSADDFVGQAIIHVKDLLVEGAENGSAELHPRKYVVVRADQSYCGEIEVGITFTRKEEEYIDNDIGGWKESDH 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00027 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Gabi2401g00027 153 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Gabi2401g00027 153 SMART C2_3c 5 106 IPR000008 -
Gabi2401g00027 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Gabi2401g00027 153 Gene3D C2 domain 2 135 IPR035892 -
Gabi2401g00027 153 Pfam C2 domain 7 104 IPR000008 -
Gabi2401g00027 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00027 Gabi-Chr2401 300899 303213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00027 3 109 C2H2 Transcription Factor Family AT4G21160 31.776 2.61e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00027 - - gmx:100500493 278.87