Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00016 ATGGGGGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAATATAATCAACAACAAGGAGTTTGTGCTAAAGATGGTCTTGCTTTGTGTCCTGGATTCACCACAACCCATGTGATTCCATTTGTAGATGGGGAGCCTGTTTATAAAGGAAGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAGTATCCATATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTAAAGATGGAACATTGTTACATTGCACCAGATTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCCAAGGAGGCAGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCGACTGAAGAGCCTCCTTCCGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGCTTAGAGAAATGGCTGAGGCAAAGAGGTCATCTAAAATAAATGAACTGGAGAATGAATTGCATGGTTTGGAATTTCTTTTGCATCAGCTTGAACAAGTGGAAGAGAGTGATGTTCCAGCTTTCCTGGCTGAAACTGGCTATGTCTCTAGGCAGGAGATAGAATCTGCGCGTAATAAAGTTATGCATTCTTTACGTAAAGCCAAAGGTGAACCAAAAACTGAACAAATTGACTCTGAAAAAGCTGACCTTGCCACTAATGAGAAGTATTCTCTTATAAACATCCCTGATGACATGTTGACACCAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCCCTCAAATCCATGTCTGAAGGGCGGCAGCGATTAAAACAGAAGCGGTATGAAGAGGAATTGGAACGAGAGAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGAGCTTTATTTGGAACAATTGCATGCTAGATACAATGATCTTTCGGAAAAAGTTGACCAGCAAAAACGGCTCAAGACTAATGGTGGGGGCCATACAAATGGAAATAATTTGTCTGGTGGTGTTGGCCGTGGTGAGAGATTGAGTGCTGCTCAGAGGGAACGAATGCGCCTCTTGACAACTGCAGCTTTTGATCGAGGTAAGGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTGTACAAATTGATGAGCAAAGATAATAATGATGATGATGAGGGACCTGATGAGGACGAGGCAGAGCTGGCCCGCATCTCTTCCAGGCTCCAGGACCTGGATCCAACATTTGTACCCAAGTTAGAAGCTAGTACCTCTCAACCTGCTGAGGTGCCGCGTTTTCGTCCTCTTACCAAAGAAGATTTTCAGATTGTTATTGGGGTGGAAAGATTTAGATGCCCTGAAATATTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGTTTAGATGAGATGGCTGGGGTCTCAATGAGGAGGTTACCATACAAGGATGAAGGCTTGGAAGAGAGACTGACTAGTTCCATACTTGTGACCGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGCCTGGAAGCTGGAATTCGAATGATTAGACCATGTGGATCACCTATAAAAATAGTTAGAGCATTGAATCCAGTAATGGATGCATGGCGTGGAGCTGCTTTCTATGCTTCAGCCTCACAGTTCCATACGCAAACTTTCAGTAGAAGTGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAATTATCAACTGCAATATACATTATAG 1770 0.4305 MGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCAKDGLALCPGFTTTHVIPFVDGEPVYKGSCRTNIGGFHVTDYLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIAPDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVEESDVPAFLAETGYVSRQEIESARNKVMHSLRKAKGEPKTEQIDSEKADLATNEKYSLINIPDDMLTPEQLNEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHARYNDLSEKVDQQKRLKTNGGGHTNGNNLSGGVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNNDDDEGPDEDEAELARISSRLQDLDPTFVPKLEASTSQPAEVPRFRPLTKEDFQIVIGVERFRCPEILFNPNWIGVDQVGLDEMAGVSMRRLPYKDEGLEERLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALNPVMDAWRGAAFYASASQFHTQTFSRSDYYEKGEDWLRNYQLQYTL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00016 589 MobiDBLite consensus disorder prediction 335 354 - -
Gabi2401g00016 589 MobiDBLite consensus disorder prediction 269 292 - -
Gabi2401g00016 589 Gene3D - 1 16 - -
Gabi2401g00016 589 SMART actin_3 3 586 IPR004000 -
Gabi2401g00016 589 MobiDBLite consensus disorder prediction 336 350 - -
Gabi2401g00016 589 FunFam Putative actin-related protein 5 549 577 - -
Gabi2401g00016 589 Coils Coil 315 335 - -
Gabi2401g00016 589 Coils Coil 285 311 - -
Gabi2401g00016 589 Gene3D - 18 72 - -
Gabi2401g00016 589 Pfam Actin 2 134 IPR004000 -
Gabi2401g00016 589 Pfam Actin 454 581 IPR004000 -
Gabi2401g00016 589 Coils Coil 175 195 - -
Gabi2401g00016 589 Gene3D - 549 577 - -
Gabi2401g00016 589 FunFam ARP5 actin-related protein 5 homolog 479 548 - -
Gabi2401g00016 589 FunFam actin-related protein 5 18 72 - -
Gabi2401g00016 589 Gene3D - 479 548 - -
Gabi2401g00016 589 Gene3D Actin; Chain A, domain 4 73 126 - -
Gabi2401g00016 589 SUPERFAMILY Actin-like ATPase domain 36 582 IPR043129 -
Gabi2401g00016 589 FunFam Actin-related protein 5 69 123 - -
Gabi2401g00016 589 PANTHER ACTIN 1 577 IPR004000 -
Gabi2401g00016 589 Gene3D Actin; Chain A, domain 4 384 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00016 Gabi-Chr2401 208649 213131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00016 455 576 Cytoskeleton Gene Families AT5G09810 36.885 1.16e-18 86.3