Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00009 ATGTACATGTCTTCCTATTGGTGTTACAGGTGTAATAGATTCATCAGGTTATGGAGGGAAGACGTGGCGATTTGTCCCGGTTGCGACAGTGGATTTGTCGAAGAAATCGAAAATCCTAACCGTTCTGTCCACGTGGACGGGCGACGTCGGCGGTTCCCGGCTGCAGCGGCCATGTACATGATCGATCAGAATTCTCGTTCCGCTCACCGGCGGCACTGCAGAAACAGAGGCGGTAACCGTTCACCGTTCAATCCGGTCATCATGCTACGCGGTGGATCCGCGGAGGGGACAAGTCGCGAGGGCGGAGACAGTCGTGGCTTCGACCTTTTCTACGACGACGGTGCCGGTTCCGGTCTCAGACCTTTGCCTCCGAGGATGTCGGAGTTTCTTCTTGGATCTGGATTCGACAGGGTAATGGAACAGCTTTCTAATATTGAGGCCAGCGGTGGTGTTGGGAGACTCAACCAGCACCCTCCGGCGTCAAAATCCGCCGTGGATTCGTTGCCGGCGATTGAGATTGAGGAGAGACACATGACCATGGAATCACACTGTGCCGTTTGCAAGGAACATTTTGAACTTGGAACCGCAGCAAGGGAAATGCCTTGCAAACATATATACCACCCTGAATGTATCTTACCATGGCTCGCAATTCGAAATTCTTGCCCCGTTTGTCGCCATGAATTGCCTTCTGATCCACAGCAGAATACACGTGATGCTTCAGCATCAGCAGAGCAATTGGTTTCCTTAAACGAGGAAGAGAATGTGGGGTTGACAATTTGGAGGTTACCAGGTGGTGGTTTTGCGGTGGGAAGGTTTTCAGGAGGAAGAAGAGGAACAGAGAGGGAGTTTCCTGGTGTATACACAGAAGTTGATGGTGGGTTTAACAATGTTATTGGTGAACCGAGGAGGGTTTCTTGGTCAGTATCAACATCATCTAGAGGGAGAAGGACAAGTGGTGGTGGATTGCGCAGAATGTTTAGCAGTTTGTTTAGTTGCTTGAGAGGTGGAGTTAGGCCTCAGCACTCTGCTTCTTCTACTATAGAATATTCTGGATCCATGAGAAGGAGTAATAGTGCATCTCGTTCCAACGCGGATCCCTCTCCACGTTCTCGCAGGACTTGGTCTATGGATGTTAATAGTGGAATGAGACCATGGTAA 1158 0.5017 MYMSSYWCYRCNRFIRLWREDVAICPGCDSGFVEEIENPNRSVHVDGRRRRFPAAAAMYMIDQNSRSAHRRHCRNRGGNRSPFNPVIMLRGGSAEGTSREGGDSRGFDLFYDDGAGSGLRPLPPRMSEFLLGSGFDRVMEQLSNIEASGGVGRLNQHPPASKSAVDSLPAIEIEERHMTMESHCAVCKEHFELGTAAREMPCKHIYHPECILPWLAIRNSCPVCRHELPSDPQQNTRDASASAEQLVSLNEEENVGLTIWRLPGGGFAVGRFSGGRRGTEREFPGVYTEVDGGFNNVIGEPRRVSWSVSTSSRGRRTSGGGLRRMFSSLFSCLRGGVRPQHSASSTIEYSGSMRRSNSASRSNADPSPRSRRTWSMDVNSGMRPW 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00009 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Gabi2401g00009 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 229 - -
Gabi2401g00009 385 MobiDBLite consensus disorder prediction 68 101 - -
Gabi2401g00009 385 Pfam Protein of unknown function (DUF1117) 255 362 IPR010543 -
Gabi2401g00009 385 SUPERFAMILY RING/U-box 164 231 - -
Gabi2401g00009 385 MobiDBLite consensus disorder prediction 335 385 - -
Gabi2401g00009 385 FunFam E3 ubiquitin-protein ligase RING1-like 147 231 - -
Gabi2401g00009 385 Pfam Ring finger domain 183 225 IPR001841 -
Gabi2401g00009 385 MobiDBLite consensus disorder prediction 338 377 - -
Gabi2401g00009 385 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Gabi2401g00009 385 SMART ring_2 184 224 IPR001841 -
Gabi2401g00009 385 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Gabi2401g00009 385 CDD RING-H2_RNF126-like 184 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00009 Gabi-Chr2401 120681 122219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00009 121 234 C3H Transcription Factor Family AT5G01980 42.105 1.66e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00009 K11982 - qsa:O6P43_014338 475.707