Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00003 ATGAATTCTTCAAACATTTTCACTTTTCAGACCAAGTCCTTAACTACGCTGCTTTGCTTCAAGTTCAGCTCTGTTATGGCAGAAACACTCATATTTTTCTATGTTGTCTTTCTGGCTTTAGTCCCTATAAACTCTCAGCGGGAAGATCTCTTCTTTGAGGGGTTTAACGGTGCTGCTGCAGCCACCAACATAAGCATAAACGGAAGTGCAGTGGTTGTGGACAATGGCATACTTCAACTTACAAACGACAACAACAAAGTACTAGGGCACGCGTTTTATTCAAACCCAATCCACTTCAAGAACTCCACCAACGGCAAAGTTTCATCCTTTTCCACCGCTTTCGCTTTTGCAATAACCACCCGGTACACAAACCAAGGTGGCCATGGATTCGCCTTCACCATTTCTCCCTCAAAAGCGCTTCCGGGTGCATATCCTAATCAGTACCTTGGCCTTCTCAACCCACACGATGTTGGGAATTTCTCAAATCACTTGTTCGCGGTGGAGTTTGACACTGTCCAGGACTATGATTTTTATGACATCAACGGCAACCACGTGGGTATCAACTTGAACAACATGAAATCTAGTATGTCTGTTCCAGCTCAACAATTCACCGATGGGTCAACCAAGAAAGTCCTTAATTTGAAGTGTGGCAAGGTGATTCAGGCATGGGTGGATTACAATTCTTCTAGAAACCAATTGGATGTTAGGCTTTCTTCAACCTCTTCAAAACCCAGTTTTCCCATTTTGTCTTACAACGTTGATCTTTCACCAATTCTTGAAGACGCTATGTATGTTGGGTTTTCTGCTTCAACAGGGATGCTAGCGAGCTGGCACTATATCTTAGGTTGGAGCTTTAAGATGAATGGAGAAGCAAAATCTCTGAATTTGGAAACATTACCACCACTCCCTCAGTCTAAGAAGAGCACAAAAACCGTAATCGTTGGGGTCACTGTTTCTGCTGCTATTCTGACAATGATTGTGGCAATTTTTTGGTTAGGAACTTATCTGGTCCGAAAGATGAAGAATGATTTTATTGAAGCTTGGGAGGTTGACATTGGTCCACACAGATTCCCATACGAAGAGCTGAAGCAAGCGACGAGGGGCTTCAATGAAAAACAGTTAATTGGTTTTGGTGGTTTTGGTCGTGTTTACAAAGGGGTTCTTCCAAACTCCAACACCCAAGTCGCAGTGAAGCGAATCTCCAATGACTCAAAGCAAGGGTGGGAAGAATTTGTGTCGGAGATTGCAACCATTGGTAGGCTTCGTCATAGGAATCTAGTACAGTTACTAGGTTGGTGTCGGAAGGGGTGTGATCTACTACTTGTGTACGATTTTATGCCGAATGGTAGCTTGGACAAGTACCTATTCGACGAACCAAAAGAAATATTGAGGTGGGAACAGAGGTTCAATATCATAAAGGGGGTAGCTTGTGGTCTTGTGTATTTGCATGAGGAATGGGAACAAGCAGTGATTCATAGGGACATAAAAGCTGGGAATGTTTTGTTGGATTCAGAAATGAATGGCAGGCTCGGTGACTTTGGTTTGGCGAAGCTCTATGAGCATGGGGCGAACCCGACCACGACCAGAGTGGTGGGAACATTGGGGTACTTGGCACCTGAACTCACGCGAACAGGGAAACCAACCACGAGTTCTGATGTGTTTGCGTTTGGTACTTTGTTGCTTGAAGTGGTGTGTGGGAGAAGGCCCTTTGAGCCTAAGGCATTGCCGGAGGAACTCATACTCGTGGATTGGGTTCGGGATCGTTGGCGAGACGGTGCCGTTTTGGAGGTTGTGGACCCCAAGTTGTGTGGTGAGTTTGATAGGGTACAGGCTTTGATGGTCCTCAAACTGGGCTTGATGTGTTCCAATGACTCTCCCGGAGAACGACCCAGTATTAGGCAGGCGTTGATGTACTTGAAAGGGGAGTTGCCGTTGTCGGAGGTGGTTGCGCCGCCGCAGGTTGGTGGTGGTGGGGACCTTGAGGACTTGGGGCATTCGTGTCCAACTTCATTGTATTTCGATAGGATGAGCATGTGGTCTTCTATGGCCGGTGATGTTGTGGCCACGTCCCTTTCACTTTATGGTGAATAG 2091 0.4596 MNSSNIFTFQTKSLTTLLCFKFSSVMAETLIFFYVVFLALVPINSQREDLFFEGFNGAAAATNISINGSAVVVDNGILQLTNDNNKVLGHAFYSNPIHFKNSTNGKVSSFSTAFAFAITTRYTNQGGHGFAFTISPSKALPGAYPNQYLGLLNPHDVGNFSNHLFAVEFDTVQDYDFYDINGNHVGINLNNMKSSMSVPAQQFTDGSTKKVLNLKCGKVIQAWVDYNSSRNQLDVRLSSTSSKPSFPILSYNVDLSPILEDAMYVGFSASTGMLASWHYILGWSFKMNGEAKSLNLETLPPLPQSKKSTKTVIVGVTVSAAILTMIVAIFWLGTYLVRKMKNDFIEAWEVDIGPHRFPYEELKQATRGFNEKQLIGFGGFGRVYKGVLPNSNTQVAVKRISNDSKQGWEEFVSEIATIGRLRHRNLVQLLGWCRKGCDLLLVYDFMPNGSLDKYLFDEPKEILRWEQRFNIIKGVACGLVYLHEEWEQAVIHRDIKAGNVLLDSEMNGRLGDFGLAKLYEHGANPTTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGTLLLEVVCGRRPFEPKALPEELILVDWVRDRWRDGAVLEVVDPKLCGEFDRVQALMVLKLGLMCSNDSPGERPSIRQALMYLKGELPLSEVVAPPQVGGGGDLEDLGHSCPTSLYFDRMSMWSSMAGDVVATSLSLYGE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00003 696 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Gabi2401g00003 696 Gene3D Transferase(Phosphotransferase) domain 1 446 651 - -
Gabi2401g00003 696 Gene3D Phosphorylase Kinase; domain 1 354 445 - -
Gabi2401g00003 696 FunFam L-type lectin-domain containing receptor kinase S.4 446 651 - -
Gabi2401g00003 696 Gene3D - 50 299 - -
Gabi2401g00003 696 CDD lectin_legume_LecRK_Arcelin_ConA 52 289 IPR001220 GO:0030246
Gabi2401g00003 696 Pfam Protein kinase domain 369 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2401g00003 696 PANTHER - 41 644 - -
Gabi2401g00003 696 SUPERFAMILY Protein kinase-like (PK-like) 350 647 IPR011009 -
Gabi2401g00003 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Gabi2401g00003 696 ProSiteProfiles Protein kinase domain profile. 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2401g00003 696 SUPERFAMILY Concanavalin A-like lectins/glucanases 54 304 IPR013320 -
Gabi2401g00003 696 FunFam L-type lectin-domain containing receptor kinase IX.1 354 445 - -
Gabi2401g00003 696 Pfam Legume lectin domain 51 299 IPR001220 GO:0030246
Gabi2401g00003 696 CDD STKc_IRAK 375 641 - -
Gabi2401g00003 696 SMART serkin_6 369 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2401g00003 696 FunFam L-type lectin-domain containing receptor kinase S.4 46 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00003 Gabi-Chr2401 38175 40501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00003 43 667 Receptor kinase-like Gene Family AT3G55550 57.919 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2401g00003 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00003 - - qsa:O6P43_014345 926.391