Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2401g00001 ATGACAGGGTTTGGCACTTCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGCACGCGTGATTGTATATTTGCTCCTTACTTCTCCTATGACCAAGCTGCAACTCATTTTGCAGCAGTGCATAAAGTTTATGGTGCTAGTAACGTCTCCAGGCTATTATCACATCTTCCAATCCATAATAGAAGTGACGCTTCCATCACCATATCTTATGAAGCATTGGCTCGCATGCAGGATCCTATATATGGTTGTGTTGCTCATATCTACGCATTGCAGCAACAGGTTGCGAGCTTGCAAGAGGAGATTGGTATTCTTGGAGGTTTAATGGCAAATTCCACAGTTAGTGATGTAAATTCTGGCAGTGTCCAAGCACCGATGAACTCAAACAACGGAATACAGTATCTTTTGAATGCCACAGTCTACCAAAGTTTCGACTCACTGAGGGATAATATAGAGCTTCCTAATAATGCACATGGACTAGAAGGGCCTTCATTTGGCAATTCTAACTCCAATCCGTTAGAGAAGTTCCTATCTGGAATTGACCAAGAGGTCTTCATGAACCATCCATGGTTCAAGCATAATGCAGACATAAAGAACTAG 597 0.4238 MTGFGTSCGACKFLRRKCTRDCIFAPYFSYDQAATHFAAVHKVYGASNVSRLLSHLPIHNRSDASITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIGILGGLMANSTVSDVNSGSVQAPMNSNNGIQYLLNATVYQSFDSLRDNIELPNNAHGLEGPSFGNSNSNPLEKFLSGIDQEVFMNHPWFKHNADIKN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2401g00001 198 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gabi2401g00001 198 Pfam Lateral organ boundaries (LOB) domain 7 101 IPR004883 -
Gabi2401g00001 198 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2401g00001 Gabi-Chr2401 19295 20068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2401g00001 1 191 AS2 family AT5G06080 49.215 1.46e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi2401g00001 LOB 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2401g00001 K13945 - gmx:100809636 305.834