Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2400g00011 ATGCTCATGCCTTTACCATTGCAGCATGCTTTGTACTTGGTCTATCTTGGACTGGTTGTTTTCGTATCGGCTTGGATGGGTGTTGCATTTTGGATGCAAACGGGAGAGAGACAAACCGCTCGTTTGCGCTTAAAATATTTGCAGGCAGTGCTAAAGAAAGATATTAATTTTTTTGACAATGAAGCCAGGGACGCTAATATCATTTTCCACATCTCTAGTGACGCAATATTAGTACAAGATGCAATTGGTGACAAGACAGGCCATGCAATGCGTTACCTTTCTCAATTCGTTGTTGGATATGCCATTGGATTTACATCAGTGTGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGAGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCCGAAGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTATTCATTTGTAGGAGAAGAGAAAGCAGTTAGTTCATACTCCAAGTCACTTGATAATGCTCTGAAGCTGGGAAAGAAGAGTGGTTTTGCAAAAGGAGTTGGAGTAGGCTTTACATATGGGCTTTTATTTTGTGCTTGGGCATTGCTTCTGTGGTATGCTAGCATCCTTGTGAGGCATAATAAGACGAATGGAGGGAAAGCTTTCACAACTATTATCAATGCCGTCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGTGTAGCTGCTGCCAATATGATGGACATGATTGCATCCGTTTCCAACAATTCTAAAAGGTTGGATAATGGCACTGTTCTGCCACATGTAGCAGGGAAAATCGAATTTTGCGAGGTTTGCTTCTCTTACCCCTCAAGGTCCAATATGGTCTTTGAAAATTTGAGCTTCTCAGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCCAGTGGTTCCGGAAAGAGCACCATCGTTTCCATTATCCAACGATTCTATGACCCCACTTCAGGTAGGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGGGAACAGATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTACAAACATTTTATTCGGAAAATATGATGCAAACATGGATCAAATCATACAAGCTGCCAAGGCTGCAAATGCTCATTCTTTCATTCAAGGATTACCTGATGGTTATCACACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGGCAAAAGCAAAGAATTGCCATAGCAAGAGCTGTGCTCAGAAACCCAAAAATACTGCTTTTAGATGAGGCTACCAGTGCTCTAGATGCTGAATCAGAACTCATAGTTCAGCAGGCATTGGAAACAATAATGTCAAACCGGACAACAATCGTTGTTGCACATCGATTATCAACCATACGTGATGTAGATACAATTGTTGTGTTGAAGAATGGTCAAGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAAAAATGGAGATTACATGAACCTGGTGAGTTTGCAAGCATCACAAAACAACAACACAAGCTCTAACTCAATATCTCGTTCTGGAAGTTCAAAAAATTCTAGTTTTCGAGAACCTTCAGAGAACCTGAACTATGAGGAGTTAAAGCTGAATACAAGAGAACTGCAAGCAAGTGATCAAGGCTTGCCACCAAACACTGCTTCCATTCCATCAATTTTGGATTTACTAAAACTGAATGCTCCAGAGTGGCCCTATGGAATACTTGGGTCAGTGGGTGCAATAATGGCTGGCATGGAAGCTCCTCTCTTTGCTCTTGGAATCACTCACATGTTGACTGCATTTTACTCTCCTAATGGTTCTAAAATCAAACAAGACGTTGATCGGGTAGCTCTCATATTTGTTGGAGTGGCTGTTGTTACCGTACCTATTTATCTATTGCAACACTACTTTTATACACTCATGGGAGAGCGTCTCACTGCACGTGTGCGTTTATCAATGTTCTCAGCTATTCTTAACAATGAAGTTGCGTGGTTTGATTTGGATGAGAACAACACTGGCAAACTAACAGCCATGCTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGATAGACTCTCAACAATTGTGCAAAATGTTGCTCTCACTGTAACAGCATTTGTTATTGCTTTCACATTGAGTTGGAAACTAGCATCAGTTGTTGCAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATTACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTATAGCCTTGCTTACTCTAGAGCAATTTCTTTGGCTCGTGAAGCTATTACCAACATACGTACTGTTGCTGCTTTTGGTGCAGAAGATAGAATCTCAGTCCAATTTTCCTCAGAATTGAACAAACCTAATAAACAAGCACTTTTAAGAGGTCACATATCAGGTTTTGGCTATGGGATAACACAGCTTTTTGCTTACTGCTCCTATGCACTTGGCCTTTGGTATGCATCCATTTTAATCAAGAACAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATTGTCACTGCTCTAGCAATAGCAGAAACACTAGCTCTTACCCCGGACATTGTGAAGGGAACACAAGCACTAGGATCAGTTTTCAGCATTCTCAAAAGGAGAACAGCCATCACACCCAATGACCCCAACTCAAAGATGGTAACTGATGTCAAAGGAGAGATAAAGTTTAATAACGTGTGCTTCAAGTACCCAATGAGACCTGATGTCACCATATTTCAGAACTTAAACCTGAGAGTCTCAGCAGGAAAGAGTTTGGCAGTAGTTGGCCAAAGTGGTTCAGGGAAGAGCACTGTGATTGCTCTGGTAATGAGATTTTATGACCCCACTTTTGGATCAGTTCTGATAGATGAATGTGATATCAAAAGCCTAAACTTGAGATCCTTGAGGCAGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTATTCTCTACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAAGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCTAATGCTCATGAATTCATTAGTAGAATGCCAGAAGGGTACAGAACTGAGGTTGGTGAGAGAGGAGTGCAGTTATCAGGAGGACAAAAACAAAGGGTGGCAATAGCTAGAGCTATTCTGAAAGATCCATCCATTCTTCTGTTGGATGAGGCAACAAGTGCACTGGACACAATATCAGAGAGGCTGGTCCAAGAGGCTCTTGATAAGCTTATGGAAGGAAGAACCACAATTTTGGTAGCTCACAGGCTTTCAACTGTTCGCAATGCAGACAGCATTGCAGTGCTGCAACATGGGAGGGTTGCTGAAATGGGTAGCCATGAGAGGCTTATTGCCAAACCTGGAAGCATCTATAAGCAATTAGTTAGTCTACAGCAAGAAAAGGGTGATCATGAAGACCATCAATGA 3507 0.4203 MLMPLPLQHALYLVYLGLVVFVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAMRYLSQFVVGYAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVSSYSKSLDNALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVRHNKTNGGKAFTTIINAVFSGFALGQAAPNLGSIAKGRVAAANMMDMIASVSNNSKRLDNGTVLPHVAGKIEFCEVCFSYPSRSNMVFENLSFSVSAGKTVAVVGPSGSGKSTIVSIIQRFYDPTSGRILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIATNILFGKYDANMDQIIQAAKAANAHSFIQGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALETIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGDYMNLVSLQASQNNNTSSNSISRSGSSKNSSFREPSENLNYEELKLNTRELQASDQGLPPNTASIPSILDLLKLNAPEWPYGILGSVGAIMAGMEAPLFALGITHMLTAFYSPNGSKIKQDVDRVALIFVGVAVVTVPIYLLQHYFYTLMGERLTARVRLSMFSAILNNEVAWFDLDENNTGKLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLASVVAACLPLLIGASITEQLFLKGFGGDYSLAYSRAISLAREAITNIRTVAAFGAEDRISVQFSSELNKPNKQALLRGHISGFGYGITQLFAYCSYALGLWYASILIKNKESNFGDIMKSFMVLIVTALAIAETLALTPDIVKGTQALGSVFSILKRRTAITPNDPNSKMVTDVKGEIKFNNVCFKYPMRPDVTIFQNLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTFGSVLIDECDIKSLNLRSLRQRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTISERLVQEALDKLMEGRTTILVAHRLSTVRNADSIAVLQHGRVAEMGSHERLIAKPGSIYKQLVSLQQEKGDHEDHQ 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2400g00011 1168 Pfam ABC transporter transmembrane region 10 237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00011 1168 Pfam ABC transporter transmembrane region 600 871 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00011 1168 CDD ABC_MTABC3_MDL1_MDL2 920 1158 - -
Gabi2400g00011 1168 Gene3D - 911 1168 IPR027417 -
Gabi2400g00011 1168 SMART AAA_5 314 500 IPR003593 GO:0016887
Gabi2400g00011 1168 SMART AAA_5 947 1133 IPR003593 GO:0016887
Gabi2400g00011 1168 FunFam ABC transporter B family member 4 278 532 - -
Gabi2400g00011 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1158 IPR027417 -
Gabi2400g00011 1168 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 598 885 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00011 1168 MobiDBLite consensus disorder prediction 528 552 - -
Gabi2400g00011 1168 CDD ABC_6TM_Pgp_ABCB1_D2_like 587 903 - -
Gabi2400g00011 1168 MobiDBLite consensus disorder prediction 528 553 - -
Gabi2400g00011 1168 CDD ABC_MTABC3_MDL1_MDL2 288 524 - -
Gabi2400g00011 1168 CDD ABC_6TM_Pgp_ABCB1_D1_like 10 261 - -
Gabi2400g00011 1168 ProSitePatterns ABC transporters family signature. 1059 1073 IPR017871 GO:0005524|GO:0016887
Gabi2400g00011 1168 Gene3D - 286 541 IPR027417 -
Gabi2400g00011 1168 PANTHER ABC TRANSPORTER B FAMILY 8 609 IPR039421 -
Gabi2400g00011 1168 Pfam ABC transporter 306 454 IPR003439 GO:0005524
Gabi2400g00011 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 524 IPR027417 -
Gabi2400g00011 1168 Pfam ABC transporter 939 1087 IPR003439 GO:0005524
Gabi2400g00011 1168 FunFam ABC transporter B family member 4 910 1165 - -
Gabi2400g00011 1168 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 288 523 IPR003439 GO:0005524
Gabi2400g00011 1168 SUPERFAMILY ABC transporter transmembrane region 586 898 IPR036640 GO:0005524|GO:0016020
Gabi2400g00011 1168 SUPERFAMILY ABC transporter transmembrane region 8 260 IPR036640 GO:0005524|GO:0016020
Gabi2400g00011 1168 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 10 253 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00011 1168 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 920 1156 IPR003439 GO:0005524
Gabi2400g00011 1168 ProSitePatterns ABC transporters family signature. 426 440 IPR017871 GO:0005524|GO:0016887
Gabi2400g00011 1168 Gene3D ABC transporter type 1, transmembrane domain 11 894 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2400g00011 Gabi-Chr2400 258426 266379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2400g00011 2 1159 Calmodulin-binding Proteins AT2G36910 49.620 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2400g00011 K05658 - gmx:100787093 1974.9