Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2400g00010 ATGGAAGAACTAGAGCTAGCCTCTGATTCCCATTTAGAACAACACCTGACATCTAAAGTGGACCAACCAACCAAAACTAAGAGTGTTTCGTTTTTTGGGTTGTTTGGTGCAGCTGATACATTAGACTATGTCTTAATGTTCTTAGGAAGCATTGGTGCATGTGTCCATGGTGCGGCTCTTCCTGTATTCTTTATTTTGTTTGGCCGTATGATTGATTCTTTGGGACATCTTTCTAATCAACCTCACAAATTGACCTCCCGAATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGACTGGTTGTTTTCGTATCGGCTTGGATGGGTGTTGCATTTTGGATGCAAACGGGAGAGAGACAAACCGCTCGTTTGCGCTTAAAATATTTGCAGGCAGTGCTAAAGAAAGATATTAATTTTTTTGACAATGAAGCCAGGGACGCTAATATCATTTTCCACATCTCTAGTGACGCAATATTAGTACAAGATGCAATTGGTGACAAGACAGGCCATGCAATGCGTTACCTTTCTCAATTCGTTGTTGGATATGCCATTGGATTTACATCAGTGTGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGAGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCCGAAGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTATTCATTTGTAGGAGAAGAGAAAGCAGTTAGTTCATACTCCAAGTCACTTGATAATGCTCTGAAGCTGGGAAAGAAGAGTGGTTTTGCAAAAGGAGTTGGAGTAGGCTTTACATATGGGCTTTTATTTTGTGCTTGGGCATTGCTTCTGTGGTATGCTAGCATCCTTGTGAGGCATAATAAGACGAATGGAGGGAAAGCTTTCACAACTATTATCAATGCCGTCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGTGTAGCTGCTGCCAATATGATGGACATGATTGCATCCGTTTCCAACAATTCTAAAAGGTTGGATAATGGCACTGTTCTGCCACATGTAGCAGGGAAAATCGAATTTTGCGAGGTTTGCTTCTCTTACCCCTCAAGGTCCAATATGGTCTTTGAAAATTTGAGCTTCTCAGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCCAGTGGTTCCGGAAAGAGCACCATCGTTTCCATTATCCAACGATTCTATGACCCCACTTCAGGTAGGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGGGAACAGATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTACAAACATTTTATTCGGAAAATATGATGCAAACATGGATCAAATCATACAAGCTGCCAAGGCTGCAAATGCTCATTCTTTCATTCAAGGATTACCTGATGGTTATCACACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGGCAAAAGCAAAGAATTGCCATAGCAAGAGCTGTGCTCAGAAACCCAAAAATACTGCTTTTAGATGAGGCTACCAGTGCTCTAGATGCTGAATCAGAACTCATAGTTCAGCAGGCATTGGAAACAATAATGTCAAACCGGACAACAATCGTTGTTGCACATCGATTATCAACCATACGTGATGTAGATACAATTGTTGTGTTGAAGAATGGTCAAGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAAAAATGGAGATTACATGAACCTGGTGAGTTTGCAAGCATCACAAAACAACAACACAAGCTCTAACTCAATATCTCGTTCTGGAAGTTCAAAAAATTCTAGTTTTCGAGAACCTTCAGAGAACCTGAACTATGAGGAGTTAAAGCTGAATACAAGAGAACTGCAAGCAAGTGATCAAGGCTTGCCACCAAACACTGCTTCCATTCCATCAATTTTGGATTTACTAAAACTGAATGCTCCAGAGTGGCCCTATGGAATACTTGGGTCAGTGGGTGCAATAATGGCTGGCATGGAAGCTCCTCTCTTTGCTCTTGGAATCACTCACATGTTGACTGCATTTTACTCTCCTAATGGTTCTAAAATCAAACAAGACGTTGATCGGGTAGCTCTCATATTTGTTGGAGTGGCTGTTGTTACCGTACCTATTTATCTATTGCAACACTACTTTTATACACTCATGGGAGAGCGTCTCACTGCACGTGTGCGTTTATCAATGTTCTCAGCTATTCTTAACAATGAAGTTGCGTGGTTTGATTTGGATGAGAACAACACTGGCAAACTAACAGCCATGCTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGATAGACTCTCAACAATTGTGCAAAATGTTGCTCTCACTGTAACAGCATTTGTTATTGCTTTCACATTGAGTTGGAAACTAGCATCAGTTGTTGCAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATTACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTATAGCCTTGCTTACTCTAGAGCAATTTCTTTGGCTCGTGAAGCTATTACCAACATACGTACTGTTGCTGCTTTTGGTGCAGAAGATAGAATCTCAGTCCAATTTTCCTCAGAATTGAACAAACCTAATAAACAAGCACTTTTAAGAGGTCACATATCAGGTTTTGGCTATGGGATAACACAGCTTTTTGCTTACTGCTCCTATGCACTTGGCCTTTGGTATGCATCCATTTTAATCAAGAACAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATTGTCACTGCTCTAGCAATAGCAGAAACACTAGCTCTTACCCCGGACATTGTGAAGGGAACACAAGCACTAGGATCAGTTTTCAGCATTCTCAAAAGGAGAACAGCCATCACACCCAATGACCCCAACTCAAAGATGGTAACTGATGTCAAAGGAGAGATAAAGTTTAATAACGTGTGCTTCAAGTACCCAATGAGACCTGATGTCACCATATTTCAGAACTTAAACCTGAGAGTCTCAGCAGGAAAGAGTTTGGCAGTAGTTGGCCAAAGTGGTTCAGGGAAGAGCACTGTGATTGCTCTGGTAATGAGATTTTATGACCCCACTTTTGGATCAGTTCTGATAGATGAATGTGATATCAAAAGCCTAAACTTGAGATCCTTGAGGCAGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTATTCTCTACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAAGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCTAATGCTCATGAATTCATTAGTAGAATGCCAGAAGGGTACAGAACTGAGGTTGGTGAGAGAGGAGTGCAGTTATCAGGAGGACAAAAACAAAGGGTGGCAATAGCTAGAGCTATTCTGAAAGATCCATCCATTCTTCTGTTGGATGAGGCAACAAGTGCACTGGACACAATATCAGAGAGGCTGGTCCAAGAGGCTCTTGATAAGCTTATGGAAGGAAGAACCACAATTTTGGTAGCTCACAGGCTTTCAACTGTTCGCAATGCAGACAGCATTGCAGTGCTGCAACATGGGAGGGTTGCTGAAATGGGTAGCCATGAGAGGCTTATTGCCAAACCTGGAAGCATCTATAAGCAATTAGTTAGTCTACAGCAAGAAAAGGGTGATCATGAAGACCATCAATGA 3753 0.4191 MEELELASDSHLEQHLTSKVDQPTKTKSVSFFGLFGAADTLDYVLMFLGSIGACVHGAALPVFFILFGRMIDSLGHLSNQPHKLTSRISEHALYLVYLGLVVFVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAMRYLSQFVVGYAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVSSYSKSLDNALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVRHNKTNGGKAFTTIINAVFSGFALGQAAPNLGSIAKGRVAAANMMDMIASVSNNSKRLDNGTVLPHVAGKIEFCEVCFSYPSRSNMVFENLSFSVSAGKTVAVVGPSGSGKSTIVSIIQRFYDPTSGRILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIATNILFGKYDANMDQIIQAAKAANAHSFIQGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALETIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGDYMNLVSLQASQNNNTSSNSISRSGSSKNSSFREPSENLNYEELKLNTRELQASDQGLPPNTASIPSILDLLKLNAPEWPYGILGSVGAIMAGMEAPLFALGITHMLTAFYSPNGSKIKQDVDRVALIFVGVAVVTVPIYLLQHYFYTLMGERLTARVRLSMFSAILNNEVAWFDLDENNTGKLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLASVVAACLPLLIGASITEQLFLKGFGGDYSLAYSRAISLAREAITNIRTVAAFGAEDRISVQFSSELNKPNKQALLRGHISGFGYGITQLFAYCSYALGLWYASILIKNKESNFGDIMKSFMVLIVTALAIAETLALTPDIVKGTQALGSVFSILKRRTAITPNDPNSKMVTDVKGEIKFNNVCFKYPMRPDVTIFQNLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTFGSVLIDECDIKSLNLRSLRQRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTISERLVQEALDKLMEGRTTILVAHRLSTVRNADSIAVLQHGRVAEMGSHERLIAKPGSIYKQLVSLQQEKGDHEDHQ 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2400g00010 1250 CDD ABC_MTABC3_MDL1_MDL2 370 606 - -
Gabi2400g00010 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Gabi2400g00010 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00010 1250 FunFam ABC transporter B family member 4 360 614 - -
Gabi2400g00010 1250 Gene3D ABC transporter type 1, transmembrane domain 34 971 IPR036640 GO:0005524|GO:0016020
Gabi2400g00010 1250 MobiDBLite consensus disorder prediction 610 635 - -
Gabi2400g00010 1250 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00010 1250 Pfam ABC transporter transmembrane region 47 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00010 1250 Gene3D - 360 607 IPR027417 -
Gabi2400g00010 1250 CDD ABC_MTABC3_MDL1_MDL2 1002 1240 - -
Gabi2400g00010 1250 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Gabi2400g00010 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 985 - -
Gabi2400g00010 1250 SUPERFAMILY ABC transporter transmembrane region 668 980 IPR036640 GO:0005524|GO:0016020
Gabi2400g00010 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Gabi2400g00010 1250 PANTHER ABC TRANSPORTER B FAMILY 19 691 IPR039421 -
Gabi2400g00010 1250 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Gabi2400g00010 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Gabi2400g00010 1250 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524|GO:0016887
Gabi2400g00010 1250 Pfam ABC transporter 1021 1169 IPR003439 GO:0005524
Gabi2400g00010 1250 SUPERFAMILY ABC transporter transmembrane region 40 342 IPR036640 GO:0005524|GO:0016020
Gabi2400g00010 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 605 IPR003439 GO:0005524
Gabi2400g00010 1250 Gene3D - 993 1250 IPR027417 -
Gabi2400g00010 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2400g00010 1250 SMART AAA_5 396 582 IPR003593 GO:0016887
Gabi2400g00010 1250 SMART AAA_5 1029 1215 IPR003593 GO:0016887
Gabi2400g00010 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1240 IPR027417 -
Gabi2400g00010 1250 FunFam ABC transporter B family member 4 992 1247 - -
Gabi2400g00010 1250 MobiDBLite consensus disorder prediction 610 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2400g00010 Gabi-Chr2400 258147 266381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2400g00010 20 1241 Calmodulin-binding Proteins AT2G36910 49.321 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2400g00010 K05658 - gmx:100787093 2109.72