Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2400g00007 ATGGGTTTTTTGAGTACCATAGCTAGTTTTTTTGGATTTGGAGTTGGAACTTCACTTGGGTTGGTGATTGGCTACTATTTGTTCATTTACTTCCAGCCAACAGATGTCAAGGATCCAATAATTCATCCTTTGGTTGAGCAAGATTCTAAAACTCTGCAACAGTTGCTTCCAGAGATACCCTTTTGGATTAAAAACCCAGACTATGATCGTCTTGACTGGCTTAATAAATTTATTGAGTATATGTGGCCTTATCTGGACAAGGCAATTTGCAAGACTGCAAGGAATATTGCAAAGCCCATTATTGCTGAGCAAATTCCGAAGTACAAAATTGATTCAGTTGAATTTGAAGTACTTACCTTAGGTTCTCTACCACCAACTTTTCAAGGAATGAAAGTCTATAGTACTGACGAGAAGGAGTTGATTATGGAACCATTAATGAAGTGGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCATTTGGGCTGCGAGCCACCGTCCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGCATCACACTGAAGCCTTTGGTTCCGAGTTTTCCTTGTTTTGCCAATATTTATGTGTCTCTCATGCAGAAGCCTCATGTTGATTTTGGACTAAAACTACTTGGAGCTGATGCAATGTCTATTCCTGGTCTTTATAGGATTGTCCAGGAACTTATTAAAGATCAGGTTGCAAAAATGTATTTGTGGCCCAAGGCCCTAGAGGTGCAAATAATGGATCCAACAAAGGCCATGAAAGTGCCTGTTGGAATCCTCCATGTCAAGGTTCTGAAGGCAGTGAAGCTTAGAAAGAAAGATCTGATGGGGGCATCAGACCCTTATGTGAAACTTAAATTCACAGATGATAAGCTTCCTTCAAAGAAAACAACTGTTAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAGTTTGGTGGTCAAAGATCCAGAATCTCAAGTCTTAGAGCTTAGTGTTTATGACTGGGAGCAGCATGTAAAGAAAAATAGAGATCCAAGATGGGATGAAACGTTTCAGTTTATGCTGGAGGAACCCCCCACCAATGAGAGGCTAAATGTTGAAGTGTTAAGTGCCTCCTCAAAGCTTGGCCTGCTGCATCCTAAGGAAACTCTGGGTTATGTGGATATAAATTTATCTGATGTTGTTACCAACAAAAGAATCAACGAGAAATATAATCTTATTGACTCAAGAAATGGACGGATTCAAATTGAGCTTCATTGGAGAACTCCCTGA 1266 0.3965 MGFLSTIASFFGFGVGTSLGLVIGYYLFIYFQPTDVKDPIIHPLVEQDSKTLQQLLPEIPFWIKNPDYDRLDWLNKFIEYMWPYLDKAICKTARNIAKPIIAEQIPKYKIDSVEFEVLTLGSLPPTFQGMKVYSTDEKELIMEPLMKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMQKPHVDFGLKLLGADAMSIPGLYRIVQELIKDQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVLKAVKLRKKDLMGASDPYVKLKFTDDKLPSKKTTVKYKNLNPEWNEEFSLVVKDPESQVLELSVYDWEQHVKKNRDPRWDETFQFMLEEPPTNERLNVEVLSASSKLGLLHPKETLGYVDINLSDVVTNKRINEKYNLIDSRNGRIQIELHWRTP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2400g00007 421 CDD C2 262 334 - -
Gabi2400g00007 421 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gabi2400g00007 421 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 336 419 IPR035892 -
Gabi2400g00007 421 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 335 418 IPR045050 GO:0008289
Gabi2400g00007 421 Gene3D C2 domain 243 336 IPR035892 -
Gabi2400g00007 421 CDD SMP_SYT 60 248 - -
Gabi2400g00007 421 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Gabi2400g00007 421 PRINTS C2 domain signature 326 334 IPR000008 -
Gabi2400g00007 421 PRINTS C2 domain signature 277 289 IPR000008 -
Gabi2400g00007 421 PRINTS C2 domain signature 304 317 IPR000008 -
Gabi2400g00007 421 Gene3D C2 domain 337 420 IPR035892 -
Gabi2400g00007 421 Pfam C2 domain 260 336 IPR000008 -
Gabi2400g00007 421 Pfam C2 domain 337 404 IPR000008 -
Gabi2400g00007 421 SMART C2_3c 261 401 IPR000008 -
Gabi2400g00007 421 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 334 IPR035892 -
Gabi2400g00007 421 ProSiteProfiles C2 domain profile. 240 366 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2400g00007 Gabi-Chr2400 222212 235386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2400g00007 259 334 C2H2 Transcription Factor Family AT4G05330 44.156 6.73e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2400g00007 - - gmx:100778906 623.239