Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2400g00005 ATGACACTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTAATGCAAAAGAAGGAAGACTATGCTGTTAAGAATGGTGGTGATGCAACGAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGGACAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGACTTTGGTTCATCAATAGATGGTTAAATGATGCTCAGTCGTTTGGTTCCAATACAAATGATAGCTTCGTTGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTGCATCTAGACAGTGAGAAGTCAACTTCATCAGGAATTCGGGTAGCTGTAAGTAACCTTCTTGGCCATCGTAGCTCTAAGGTTCAAGATAGAGCAAGAGTATTACTTGACAGCTGGAAAGGAGGTGGAAATGGAAATGCTGAATCTCATGAATCAGATCTTGGTAGAGTCAACAATGTGAGTGATAAGATTGTCAGGGAGGAAGACCAGCCCTCTTCCAGGAACGAAGCTAGCAATGACGATGATCATGCATCACTACTTGTTGGAGGTGAGAAGTCTCAATTGAGAAGATCAGATAGTCAGCTACCACAAAAGGTTGCTAGTGTACAGATACAGAGTTCTGACAATGCACTTCAGTCCTCTGCAAGCTTGGACTGTGACGATATCAAAGATAGATCAAACCATCTTGCTGGTGTTTTGACTTCTGTTCAAGAAGTTGCTCCCATAAGCGAAGGTGAGACCACATCGGCCGGGACCTGTAACCTACCTATTCCAAAGCAATGCAGTTTCAAAGGTCAACAAGATGATTTACAGTTAAATGACTTATGCAAAACAGAGAAGCAAGACCAAAATGTTAATGGCCCTCCAGAAAAATTAGGAGTACCAGATATCTCTTCGGCATCCACAAAGCCAGAGCCTGAACCTGTTTCCATTGGTGCTAGTGAAGCAAAAGCACTGGAATTTGTGAAAGAACCTGCTTTAGGACATAGTGTTGAAAGCAATGAGGATGGTGTTTGTCAAAAAATAATTGTTTCCGGTAGCATGAAAACACCTGCATCTGATAGAATGAGCGGGGTGGATGATGCCAGAGCTATAAATTCTAGCAATCCACAACATACGAAAACTTCAGAAAACAATGATGACTGTTATTCTAATGCATTGCAGGACTCATCCGTCAGTGGAAGTAACTTGGTAAAGCCTGAGGTGTTACAGATGTCTTTCCTCAAAACAGAATATGTCAGAGCTGTAAAGGAAGGCAAGGGAGAAGTTTCTAATCAAGGCGACAATACCTCAAATGGTTCTGATTCTTTTAAATGGGGAAAAGGTCCTAGAAGCCCTAACATTACTGACAAAAGTTCTGGCATTAAACATGAGTATGGGATTGTTGATACTTCAGAAGTGGCTCGACAATGTGCTCAGGAAATTGAAAGAGAATATGGCAGAACAGTAAAGGAAGTTTCTAGTCAAGGCTATGATACATCAAATGGTTCTGTTTCTTTTAAACGGGAAAAAAATTCCAGAAGCCGTAACATTATTGACAAGAGTTCTGACATTGAACTTGAGTACGGTATTGTTGATGCCTTAGAAGTTGCTCGACAAGTAGCTCAGGAAGTTGAGAGAGAAGTCCGCAGCTCTTCCTCAGAGAAAATCTCAGAAGGCAGAATCAGGCGAGCAGGCAGCCCAGATTCTATAGGGAAAAAGGATGAACTCACTTGCATCCTACCTGAGGAGGTATCATCCAGGCAAAGCAACTCTGCTGAGGCATGTTCTGAAGAGGAGGGGCAGATGAGTGTTTCAGATGATATTGAGGCTGACCCAGAATGTATACCTGACTTGGAGTCCTCCCAGGTGACTGAAGCAGCTCGAGATGCAGGAGGTAATTCAGAGAAAAGCCTCTGTACCTTCGATCTCAATGAAGAAGTTGGCTCTGATGATATGGATGTTTCTGTAAATGCTATGTCTACTACACCAATACCTGTTGTCTCTGCTTCAAAGCCTGCACAGAGTTCTGGGTTGCCAACGGCCCCTTTGCAGTTTGAGGGGACACTTGGATGGAAAGGATCAGCTGCTACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCCGATAGTGAGAAGAATGTATCTGTGGGTGGGAACTCTGATATTTCCAAGCAGAGGCAGGATTTCCTTGATATTGATCTGAATGTGGCTGAGGGTGAGGAAGGATTGGTAAAACAAATTGGTGAATTTTCAGGCCTTCCATCTGGGCAATCATCAGTGGAACTTAGTTCGAAGAGATCAAGCAGACTCGAATTGGATTTAAACAGTATTGGTGATGATGGTGATAACCAACCTTCAGACCAGAGAATGGAGGGGCAACTCTTTTCTGGTAGAAATGGCTATTGGAGTCCATCACCAGCATCATCGTCGTCATCAATGCAGCCTTCAGTTCGAAACATTGATTTGAATGACAGACCATACTTTCAAACAGAGTTAGTCGATGAAGAACCGATTAAGTCTTCTCCCATTATTGAAGCATATGGACGTTCTAAATCAGATGCTCCTGTGATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGGAGAGAATATGTTCCTCAAACTTTTTCTTTGCCGAATGGCAAGGCTATTGAGCCTGCAATTGATCTTACAATGTCGGGAGCAGGTGGCATTTTAGGGATGAGCCCCACAGTATCCTACGATCAGTCAGCTGTTTTTGGGTATAATGGACTGACATCAGCGCCCCCTTTGTCTTTTTCATCAGCCATGTATGGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGTGCTCCAGTTGTGCCTCAAGTGGGAGGATCTTCCTCAACCGTCCTGTCACCATACGCTCAGCCTCCATTCATCATGAGCATGACCGGTACACAACTTGGTTTAAATGGGGTTGGTCCTTCACGTCCCAACTTTGATCTAAACTCTGGCTTCATGATTGATGGTGGGAATAGAGACCAATTGGCTGCAAGGCAATTTTTCTTTCCTGCACAGGGAAGAGCTATGGAGGAGCATGTAAGGACCATTCCACAATCCTCAAGTTCAGGGGTTAGTGGGAAAAGAAAGGAGCCAGACAGTGGCTGGGAAACCTATCCATTTAGCTACAAACATCAGCAACCTCCATGGAAGTAG 3210 0.438 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKKEDYAVKNGGDATRQWAAVASTIAATEDKDCLDLFIQLDGLWFINRWLNDAQSFGSNTNDSFVEESITAMLRAVEKLHLDSEKSTSSGIRVAVSNLLGHRSSKVQDRARVLLDSWKGGGNGNAESHESDLGRVNNVSDKIVREEDQPSSRNEASNDDDHASLLVGGEKSQLRRSDSQLPQKVASVQIQSSDNALQSSASLDCDDIKDRSNHLAGVLTSVQEVAPISEGETTSAGTCNLPIPKQCSFKGQQDDLQLNDLCKTEKQDQNVNGPPEKLGVPDISSASTKPEPEPVSIGASEAKALEFVKEPALGHSVESNEDGVCQKIIVSGSMKTPASDRMSGVDDARAINSSNPQHTKTSENNDDCYSNALQDSSVSGSNLVKPEVLQMSFLKTEYVRAVKEGKGEVSNQGDNTSNGSDSFKWGKGPRSPNITDKSSGIKHEYGIVDTSEVARQCAQEIEREYGRTVKEVSSQGYDTSNGSVSFKREKNSRSRNIIDKSSDIELEYGIVDALEVARQVAQEVEREVRSSSSEKISEGRIRRAGSPDSIGKKDELTCILPEEVSSRQSNSAEACSEEEGQMSVSDDIEADPECIPDLESSQVTEAARDAGGNSEKSLCTFDLNEEVGSDDMDVSVNAMSTTPIPVVSASKPAQSSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNSDSEKNVSVGGNSDISKQRQDFLDIDLNVAEGEEGLVKQIGEFSGLPSGQSSVELSSKRSSRLELDLNSIGDDGDNQPSDQRMEGQLFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTELVDEEPIKSSPIIEAYGRSKSDAPVISILGAKVEVGRREYVPQTFSLPNGKAIEPAIDLTMSGAGGILGMSPTVSYDQSAVFGYNGLTSAPPLSFSSAMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSPYAQPPFIMSMTGTQLGLNGVGPSRPNFDLNSGFMIDGGNRDQLAARQFFFPAQGRAMEEHVRTIPQSSSSGVSGKRKEPDSGWETYPFSYKHQQPPWK 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 437 452 - -
Gabi2400g00005 1069 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Gabi2400g00005 1069 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 498 1069 - -
Gabi2400g00005 1069 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 433 467 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 294 323 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 363 406 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 553 615 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 553 588 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 162 191 - -
Gabi2400g00005 1069 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 155 IPR035441 -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 704 731 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 590 606 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 1033 1069 - -
Gabi2400g00005 1069 Coils Coil 542 562 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 783 824 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 709 731 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 376 406 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 788 824 - -
Gabi2400g00005 1069 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2400g00005 Gabi-Chr2400 187861 194979 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi2400g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2400g00005 - - gmx:102667261 1505.35