Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi239g00002 ATGCTGGTTCAACTTCTCACAATCATTATTATAGTTGTCACAGCCACAGGAACAGGATCGTACTCTGTGTTGCACATGGATTTGGATTCAACACCTCTAGTTTCCTTTCTTGAGCGTCTACAAGAAGCAGCATTCAACACCTTTGGCTTAGGGGTGGATCCTAAGACGTACGTTGACATGCCATTGAAGTTGGATTTGTGTGTGACAGAAGAAGCATTTGATAAACTTGGTAGGAGTGGTGACGGGAAAGTGTCGGTTGAGGAGTTGACATGTTTCATAGAAGAGTACTTTGAAAGAGCAGGGGATGACATGGAGCCTTTGGAGGCAGAAGATTTTGTTGAAGAACCAGAAGGTTTTTTGGCAAAGGTGGAACACCCTGAGGTGAGGGAATGGGCATTGAAGGTGCATTCTCTTTGGAATAATTTGAGTAGAAAAATGTGTAATGGGGTCAAAAGGGAACCTCATTTGCATACTCTGCTTCCTGTCCCATCTCCTTTCATCATTCCCGGATCACGCTTTCGTGAGCTCTATTACTGGGATTCCTACTGGGTAATTAGGGGCTTGCTAGTGAGTAAGATGTATAAGACTGCTACAGGAATTGTTATTAATCTCATTTCTCTAATTGAAGAATATGGATTTATGCCTAATGGTGCTAGAGTTTACTACACCAACAGGAGCCAGCCTCCCCTTTTAAGTGCTATGATTTATGAGATATACAGTTGCACTGGTGATATCGATTTGGTTAAAAGGTGTCTGCCTGCATTACAAAAAGAGTATGAGTTTTGGAATTCAGAAAAACATAAAGTGACCATTCTGGATGCTCAAGGTTGCACTCACACCTTAAATCGTTATTATGCAATGTGGAACAAGCCTAGGCCCGAAGCCTTTGTAAAGGACAAGGCATTTTCTTCCAAGCTTTTGGATGCAACAGAAAAACAACATTTTTACCGGGAATTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGAGATCCATCAGATTTCACAACAATGGCTACAACATCTGTGATACCTGTTGATTTAAATGCATTTCTACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACTGGAGATAATAGCACTGCTGAACACTTCCTGGAATTGTCTGATGCTAGAAAGAAGGCCATGAACTCTGTTTTCTGGAATGAAGACATGAAACAATGGCTTGATTCTTGGCTCACTAATAGCACATTTGAGGAAGCTCAAGTTTGGGAATCCCTGAACCAAAACCAAAAAGTATTTGCTTCCAATTTTATTCCATTGTGGATGGAGCCATTTTACTCAGATACTTCACTTGTGGGTAGAGTTGTTGAAAGTCTCAAAACTTCTAGCCTGGTTTGTGCTGCTGGAGTTGCAACTTCTCTGACTAATTCAGGACAACAGTGGGACTTTCCAAATGGTTGGGCCCCGCTTCAACAAATGCTAGTTGAAGGTCTATTAAAATCTGGGTTGAAAGAAGCAAGGTCATTGGCTGAGGAAATTGCTGTGAGATGGATCACAACCAACTATGTTGCTTACAAGAGAACGGGCGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGGAAATTTGGAGGTGGGGGTCTATATGCACCCCAGACTGGTTTTGGCTGGTCGAACGGAGTTGTGTTGGCATTTTTGGAGGAGTTTGGATGGCCACAAGACAGGAATATAGATTGCTGA 1728 0.4213 MLVQLLTIIIIVVTATGTGSYSVLHMDLDSTPLVSFLERLQEAAFNTFGLGVDPKTYVDMPLKLDLCVTEEAFDKLGRSGDGKVSVEELTCFIEEYFERAGDDMEPLEAEDFVEEPEGFLAKVEHPEVREWALKVHSLWNNLSRKMCNGVKREPHLHTLLPVPSPFIIPGSRFRELYYWDSYWVIRGLLVSKMYKTATGIVINLISLIEEYGFMPNGARVYYTNRSQPPLLSAMIYEIYSCTGDIDLVKRCLPALQKEYEFWNSEKHKVTILDAQGCTHTLNRYYAMWNKPRPEAFVKDKAFSSKLLDATEKQHFYRELASAAESGWDFSTRWMRDPSDFTTMATTSVIPVDLNAFLLGMELNIAFFAKVTGDNSTAEHFLELSDARKKAMNSVFWNEDMKQWLDSWLTNSTFEEAQVWESLNQNQKVFASNFIPLWMEPFYSDTSLVGRVVESLKTSSLVCAAGVATSLTNSGQQWDFPNGWAPLQQMLVEGLLKSGLKEARSLAEEIAVRWITTNYVAYKRTGVMHEKFDVEHCGKFGGGGLYAPQTGFGWSNGVVLAFLEEFGWPQDRNIDC 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi239g00002 575 PANTHER TREHALASE 30 573 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 ProSitePatterns Trehalase signature 2. 476 485 IPR018232 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 281 298 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 211 229 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 469 485 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 348 365 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 391 407 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 316 333 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 PRINTS Glycosyl hydrolase family 37 signature 549 562 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 ProSiteProfiles EF-hand calcium-binding domain profile. 70 99 IPR002048 GO:0005509
Gabi239g00002 575 Pfam Trehalase 53 566 IPR001661 GO:0004555|GO:0005991
Gabi239g00002 575 SUPERFAMILY Six-hairpin glycosidases 46 568 IPR008928 GO:0005975
Gabi239g00002 575 Gene3D - 36 573 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi239g00002 Gabi-Chr239 130362 139227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi239g00002 30 575 Trehalose Biosynthesis Gene Families AT4G24040 57.895 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi239g00002 K01194 - gmx:547539 857.825