Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2396g00016 ATGATGGGAAACACTTGTGCAAAACCGGTTGCTGATCATGTGTCTTCTTCTAATTTTGCAGGAAGCAAGAAGCCTCTAAGCAAGACAAAGCAGCATTCAAATTCTTCTGAACAAAAAGCTGTTATCCAAACTTCAGAGTTAAATATTGTCAAATCAGTCTCCAATAACCTTAAGTCCTTCAGCTTGAGTGATCTAAAGGAAGCAACTAAGAACTTCGGGCAAGACAATTTGATTGGAGAGGGAGGGTTTGGGCGCGTCTTCAAGGGATGGATTGATGAGAACACATATGCTCCCACAAAACCGGGGAGTGGAATTGTAGTGGCCATTAAGAATCTCAAGCAAGGAAGCAAAGGCCACATGGAATGGCTTGCAGAAGTCCATTATCTAGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGTTATGAGGATGAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGTTTGGAGAATCGTTTATTTAGAAAAGGTGTTCAACCCATTGCCTGGATCACACGGGTCAACATTGCAATTGGTGTTGCAAGAGGATTAACATTCTTACATTCCCCGGATGCAAATGTTATCTTTCGTTTTTTAAAGGCTTCCAATATTCTACTTGATTCAGATTTCAATGTCAAGCTTTCTGGTTTTGACTTGGCAAGAGATGGGCCTACCAGAGATAATACTTACATTTCAACCAGAATTATCGATCAAGGTTATGCTGCACCAGAGTATCTGGCCACAGGTCATTTGACTCCAAGGAGTAATGTATACAGCTTTGGCGTTGTCTTGTTAGAGTTACTAACAGGAAGGTGTGCCATGAAAGATGATAGACCTGAATTTTCAGATGAAGATCTTGTGGATTGGGCAAAGCCCTTCCTGAGTGATAGCAGAAGAGTGTTGAGAATCATGGATACTAGGTTGGGTGGTGAATACTCCAGGAAAGGAGCACAAGCTGCTGCTGCACTTGCATTGCAATGCTTGAACACAGACCCCAAATTTAGACCACCTATGTTAAATGTTCTAGCAGCATTGGAAGGACTTCATTCCTCTAATACAATCACAAGGACACCAAAATCTGAAATTGAGAATCATGCAACTAAGCATTCTGGTCATTCACAACAATGTAGCACCGACTCGACACCATAG 1167 0.413 MMGNTCAKPVADHVSSSNFAGSKKPLSKTKQHSNSSEQKAVIQTSELNIVKSVSNNLKSFSLSDLKEATKNFGQDNLIGEGGFGRVFKGWIDENTYAPTKPGSGIVVAIKNLKQGSKGHMEWLAEVHYLGQLHHENLVKLIGYCYEDENRLLVYEFMQKGSLENRLFRKGVQPIAWITRVNIAIGVARGLTFLHSPDANVIFRFLKASNILLDSDFNVKLSGFDLARDGPTRDNTYISTRIIDQGYAAPEYLATGHLTPRSNVYSFGVVLLELLTGRCAMKDDRPEFSDEDLVDWAKPFLSDSRRVLRIMDTRLGGEYSRKGAQAAAALALQCLNTDPKFRPPMLNVLAALEGLHSSNTITRTPKSEIENHATKHSGHSQQCSTDSTP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2396g00016 388 Gene3D Phosphorylase Kinase; domain 1 31 156 - -
Gabi2396g00016 388 PANTHER OS01G0588500 PROTEIN-RELATED 30 355 - -
Gabi2396g00016 388 MobiDBLite consensus disorder prediction 1 39 - -
Gabi2396g00016 388 Pfam Protein tyrosine and serine/threonine kinase 76 348 IPR001245 GO:0004672|GO:0006468
Gabi2396g00016 388 Gene3D Transferase(Phosphotransferase) domain 1 157 378 - -
Gabi2396g00016 388 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Gabi2396g00016 388 MobiDBLite consensus disorder prediction 10 39 - -
Gabi2396g00016 388 SUPERFAMILY Protein kinase-like (PK-like) 47 356 IPR011009 -
Gabi2396g00016 388 FunFam Serine/threonine-protein kinase BIK1 36 156 - -
Gabi2396g00016 388 ProSiteProfiles Protein kinase domain profile. 72 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2396g00016 Gabi-Chr2396 282064 289351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2396g00016 51 351 Glycoside Hydrolase AT3G07070 46.104 4.51e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2396g00016 PK_Tyr_Ser-Thr 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2396g00016 - - gmx:100800654 588.186