Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00033 ATGGCGTCGTTATTCAAGGATCCATCGAAGCTTTCAGCGTATAGAGATAGAAGATTCCCTGGAACGCAAGAGGATTTTGAGCAGGCGCTTCTGAATTCAACAACTGTTTACATAGGGAACATGTCGTTTTACACAACGGAGGAGCAAGTTTACGAACTGTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACACTAAAACGCCATGCGGCTTTTGTTTCGTTTTATATTACTCACGGGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTTGATGATCGCCCTATTCGTGTTGATTTTGATTGGGGATTCCAGGATGGCAGACAATGGGGTCGCGGTCGTAGTGGTGGTCAGGTGCGTGACGAATATCGCACGGATTATGATCCTGGTAGAGGTGGTTATGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGGTCTTTGGGCTCTTTTCCGCCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAAGCCATGGTCATGGTGGTTCCCATCGGCATGGTAGAGGTAATTACTATAGGAAAAGACACAGAGATGATGACCGCCACACACACGAGTCCTCAAAAAGAACATCAGATCATGAAACTCGAAGAAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGCGGGGATTCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGGCTTAA 765 0.4536 MASLFKDPSKLSAYRDRRFPGTQEDFEQALLNSTTVYIGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSYGRHGGSHGHGGSHRHGRGNYYRKRHRDDDRHTHESSKRTSDHETRRNSDHESRPEKNPRFRESGDSDDEEEDDRKRRA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00033 254 MobiDBLite consensus disorder prediction 163 254 - -
Gabi2394g00033 254 CDD RRM_NCBP2 36 113 IPR034148 -
Gabi2394g00033 254 SMART rrm1_1 35 108 IPR000504 GO:0003723
Gabi2394g00033 254 MobiDBLite consensus disorder prediction 198 254 - -
Gabi2394g00033 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Gabi2394g00033 254 MobiDBLite consensus disorder prediction 120 139 - -
Gabi2394g00033 254 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 252 IPR027157 GO:0000339|GO:0005846|GO:0045292
Gabi2394g00033 254 MobiDBLite consensus disorder prediction 124 138 - -
Gabi2394g00033 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Gabi2394g00033 254 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Gabi2394g00033 254 Gene3D - 6 150 IPR012677 -
Gabi2394g00033 254 MobiDBLite consensus disorder prediction 183 197 - -
Gabi2394g00033 254 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00033 Gabi-Chr2394 292421 295975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00033 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 1.20e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00033 K12883 - gmx:100789535 413.69