Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00030 ATGCTAGCGGAGTCACCTTTGAGGATCACAAGAGATGAAAATGAAAGCCAAGGTGAGATGGAGAGTTTCTCGATCGGAGTTGATGACTTTGCTGACCTTTCCGACGGGAACTTGTTGGAAAGCATTGACTTCGATGACCTATTCGCCGGCATCGACGTCGACGGTGACATCTTGCCAGATCTCGAGATGGACCCTGAAATGCTGGCTGAGTTCTCCGTCAGTGGCGGTGAGGAATCCGAGATGGTCTCTTCGGTTTCAATGGTTAACAACAAATCTGATAACGATGATGATAGGAATATAATTAACACGACAAAACACGATGAAGATAAAACAGCTTCTTCGGATTCGGGTGCGAATTCTGGGTCAAGTAGAGGGGAAGAGATTGTGAGCAAAACAGACGAATCCGTGGTTGTGAATCCATCGCCTAAGGAAGGTGACAAAGTAAGAAAATCTTCAGCCCTATCAAAGAATCCTCATGGGAAGAGAAAGGTTAAGGTGGATTGGACCCCAGAGTTGCATAGGCGATTTGTGCAGGCAGTAGAACAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGCTAGCGCGTGAAGCAGAAGCAGCAAGCTGGAGTCAACGGAGGCAAATGTTTTGTGTAGATAGAGGAGGTGGAGGCAAGAGAAACGTGAGTCCTTGGCTTGCACCAACAACCATGGGTTTCCCTCCCATGACACCAATACACCATTTTAGACCCTTACATGTATGGGGGCATCACACGATGGACCAATCATTTATGCACATGTGGCCTAAACATATACCTTGTTCGCCTTCACCACCAGCATGGGCACCGCGAGACCCTTCATTTTGGCATCAAATGGCTCCAAATGCACCAATCCCAGGAACCCCTTGTTTTGCACGACCTCTGACAACATCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTTTAGCAAAACCATGGTTGCCGCTGCCTCTTGGGCTTAAAGCTCCAGCGCTTGATGGTGTAATGGGTGAATTACAGAGACAAGGAATTCCAAAAATTCCACCTTCTTGTGCTTGA 1146 0.4677 MLAESPLRITRDENESQGEMESFSIGVDDFADLSDGNLLESIDFDDLFAGIDVDGDILPDLEMDPEMLAEFSVSGGEESEMVSSVSMVNNKSDNDDDRNIINTTKHDEDKTASSDSGANSGSSRGEEIVSKTDESVVVNPSPKEGDKVRKSSALSKNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMFCVDRGGGGKRNVSPWLAPTTMGFPPMTPIHHFRPLHVWGHHTMDQSFMHMWPKHIPCSPSPPAWAPRDPSFWHQMAPNAPIPGTPCFARPLTTSSKESIDAAIGDVLAKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00030 381 Gene3D - 160 221 - -
Gabi2394g00030 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 219 IPR017930 -
Gabi2394g00030 381 MobiDBLite consensus disorder prediction 72 164 - -
Gabi2394g00030 381 Pfam Myb-like DNA-binding domain 166 215 IPR001005 -
Gabi2394g00030 381 SUPERFAMILY Homeodomain-like 161 220 IPR009057 -
Gabi2394g00030 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 163 217 IPR006447 GO:0003677
Gabi2394g00030 381 FunFam Two-component response regulator 159 222 - -
Gabi2394g00030 381 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2394g00030 381 PANTHER TRANSCRIPTION ACTIVATOR GLK1 331 380 IPR044825 GO:0003700|GO:0045893
Gabi2394g00030 381 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00030 Gabi-Chr2394 252615 257469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00030 27 312 G2-like Transcription Factor Family AT5G44190 46.230 4.81e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2394g00030 Myb_DNA-binding 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00030 - - gmx:100775671 518.464