Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00025 ATGGTTCACCTCTTCCACCTTCTCCTCCTCTTTCTCTCTCTATCTCATGTTCTCTCTCTAAACCAAGATGGCCTCTTCCTCATGGAAGCTAAGCTCCAACTCTCAGACCCAACCAATTCTCTCTCTAACTGGAACCACCGTGACCCCACCCCATGTAACTGGACCGGCGTAACCTGCCACCGCATCACCGGCGTCGTCACCGCCGTCAACCTCCCCAACTCCCAACTCGCCGGTCCCTTCCCCACCGCACTCTGCCGCCCTCCATTTCTCTCCTATCTCTCTCTCAACAACAACAACCTCAACTCCACCATCCCCTCCGCCGCATTCTCCGCCTGCACCCGCCGCCTCCGCCACCTCGACCTCTCCGGCAACCTCTTCACCGGAACAATCCCGGAAACTCTCTCCGGACTCACCTCACTCCGCCGCCTCGACCTCTCGCAAAACAATTTCTCCGGCGACATTCCGGCGAGCTTCGGCCAGTTTCAGCGCCTTGAGTCGCTGGTCCTCGTGAACAACCTTTTGAATGGAACCATAGCGAGTTCTCTCGGTAACATTTCGACACTGAAGGAGCTTCACCTCGCTTATAACATCTTCTATCACGCTATACCGAGTGAGTTGGGGAACCTTACGAACCTCGAGGATCTTTGGCTCGCAGGGAGTCACCTCGTGGGTTCGATTCCGGTTTCGCTTCGGGGTTTGGTTCGGCTTCGGAACCTCGACTTGTCACAGAACATGCTCACGGGGACCATACCGGAACAAGCGTTGTCGGGGCTTAGCAGCATTGTGCAAATCGAGCTTTATCAGAACTCTCTCTCCGGCGAGTTACCCGGTGCCGGATTTTCCAACCTGACACGGTTGGAACTTTTCGATGCTTCGGCGAACGAGTTGACTGGGACGATTCCTGACCAGTTATGCAGGTTGAAAACGCTTGTCTCTCTAAACTTGGATCTTAATTTTCTCGAAGGTTCTTTGCCGGAGAACATAACAGTGTCTGAGAGCTTGTATGAGTTGAAATTGTTCAACAACTCGCTCTCTGGACCGTTGCCGAGTGCTCTGGGGAAAAACTCGCGGTTGGTGATGCTTGATATTTCGTTTAATCAGTTTTCCGGTGAAATTCCGGCGGGTTTGTGCGGTGGTGGAAGGTTGGAACAGTTGTTGCTAATGTACAATTCGTTTTCGGGGGAAATCCCTGAGAGTCTCGGGAATTGCAAGAGCTTGTTAAGGGTTCGGCTTAGGAACAATAACCTTTCTGGTGTTGTTCCTGATGGTTTTTGGGGTTTGCCTCGTCTGTATTATTTGGAGCTTGTTGAAAATTCTCTTTCTGGGCCGGTTTCTAATGCAATTTCCGGTGCTTATAATCTGTCAAGTTTGTTAATTTCGAGGAACAAGTTTTCTGGGTCGATTCCTGATGCAATTGGGTCGTTGAATTGTCTTGAGCAGTTTGATGCCAGCCATAATAGTCTTACTGGTCGGATTCCGACCAGTGTGGTCAAGCTCCGCCAGTTGGATAGGCTTATTCTGAGTGACAATAAACTTTCTGGAGAAATTCCTGGTGGAATTGGTAATATGACAATGCTTAATGAGCTTGATTTGGCGAATAATGGACTCGATGGCAATATTCCAAGAGAGTTAGGAACTTTGAAGGTGCTTAATTATCTTGATCTTTCTGGTAATGCCTTTTCTGGTGAAATTCCAAATGAGCTGGCAAATTTGAAGCTTAATTTGCTGAATTTGTCAAACAATTTTCTTTCTGGGCCTATCCCTCATATTTATGACAATGCGAATTACAGAGATAGTTTTGTAGGAAATCCGGACCTCTGTGGTGAACTTCGTGGACTATGTCGAAGCTCTGATGAAAGTAAGAACAGCAAATATGCACGGAGTTTTTGGTTAATATTTGTATTTGCTGGGATTGTGTTAATCATTGGGGTGGTATGGTTTTACTTCAAATTCCGGAACTTGAAGAAGATGAAAACGGTATTGAACATGTCAAAGTGGATGTCATTTCATAAGCTGGGCTTCAGTGAGTTTGAGATTCTTAAATTCCTGAGTGAAGATAATGTAATAGGAAGCGGATCATCTGGGAAGGTCTACAAAGTAGGGCTGAGTAATGGTGAGGTGGTGGCAGTGAAGAAATTGTGGGGAGCAGATAAGATGCAAAATAGAAGTGTTGATACTGAGAAGGATGGATTTGAAATTGAAGTTGAAACACTGGGAAAGATTAGGCACAAGAATATTGTGAGGTTATTGTGTTGCTGCAAGTCTGGGGATAGCAAGCTCCTAGTTTATGAGTATATGCCAAATGGGAGCCTGGCTGATTTGTTGCATTATAGGAAGAAAAGCTTGTTGGATTGGCCAACTAGATATAAAATTGCTATTGATGCTGCTGAGGGACTTTGTTATTTGCATCACGATTGTGTCCCACCTATTGTTCATAGGGATGTAAAATCTAGCAATATCTTGCTAGATGGAGAATTTGGTGCAAAAGTTGCAGATTTTGGAGTTGCCAAAATTGTTAAGGGTGTCAGCCAAGGGGAAGAATCCATGTCTGTGATTGCTGGATCTTATGGTTACATTGCACCAGAATATGCTTATACTGTTCGGGTGAACGAAAAGAGTGACATTTATAGCTTTGGTGTAGTGATTTTGGAGTTGGTAACTGGAAGACCCCCTCTTGATCCAGAGTATGGCGAAAATGATCTTGTTAAATGGGTTTACTTAACTTTGGATGAGAAAGGACAGGATCAAGTGATTGATCCCACTCTGGATTTGAAGTATGGGGAAGAAATCAACAAGGTACTTAGCTTGGGGCTTCTTTGTACCAGCCCTCTTCCTATAAACCGCCCTTCAATGCGCAGAGTGGTAAAAATGCTGCATGAAGTAACTTCAGTTCGCAAATCCAGGAGTGGAAATCTCTCTCCTTACTATCAAGAAGAGGTCTCTGACAATGATAATCAGGGAAGCATAGTTTAA 2973 0.4568 MVHLFHLLLLFLSLSHVLSLNQDGLFLMEAKLQLSDPTNSLSNWNHRDPTPCNWTGVTCHRITGVVTAVNLPNSQLAGPFPTALCRPPFLSYLSLNNNNLNSTIPSAAFSACTRRLRHLDLSGNLFTGTIPETLSGLTSLRRLDLSQNNFSGDIPASFGQFQRLESLVLVNNLLNGTIASSLGNISTLKELHLAYNIFYHAIPSELGNLTNLEDLWLAGSHLVGSIPVSLRGLVRLRNLDLSQNMLTGTIPEQALSGLSSIVQIELYQNSLSGELPGAGFSNLTRLELFDASANELTGTIPDQLCRLKTLVSLNLDLNFLEGSLPENITVSESLYELKLFNNSLSGPLPSALGKNSRLVMLDISFNQFSGEIPAGLCGGGRLEQLLLMYNSFSGEIPESLGNCKSLLRVRLRNNNLSGVVPDGFWGLPRLYYLELVENSLSGPVSNAISGAYNLSSLLISRNKFSGSIPDAIGSLNCLEQFDASHNSLTGRIPTSVVKLRQLDRLILSDNKLSGEIPGGIGNMTMLNELDLANNGLDGNIPRELGTLKVLNYLDLSGNAFSGEIPNELANLKLNLLNLSNNFLSGPIPHIYDNANYRDSFVGNPDLCGELRGLCRSSDESKNSKYARSFWLIFVFAGIVLIIGVVWFYFKFRNLKKMKTVLNMSKWMSFHKLGFSEFEILKFLSEDNVIGSGSSGKVYKVGLSNGEVVAVKKLWGADKMQNRSVDTEKDGFEIEVETLGKIRHKNIVRLLCCCKSGDSKLLVYEYMPNGSLADLLHYRKKSLLDWPTRYKIAIDAAEGLCYLHHDCVPPIVHRDVKSSNILLDGEFGAKVADFGVAKIVKGVSQGEESMSVIAGSYGYIAPEYAYTVRVNEKSDIYSFGVVILELVTGRPPLDPEYGENDLVKWVYLTLDEKGQDQVIDPTLDLKYGEEINKVLSLGLLCTSPLPINRPSMRRVVKMLHEVTSVRKSRSGNLSPYYQEEVSDNDNQGSIV 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00025 990 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 766 973 - -
Gabi2394g00025 990 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Gabi2394g00025 990 SUPERFAMILY L domain-like 35 372 - -
Gabi2394g00025 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 275 - -
Gabi2394g00025 990 SUPERFAMILY RNI-like 280 585 - -
Gabi2394g00025 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Gabi2394g00025 990 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Gabi2394g00025 990 Gene3D Ribonuclease Inhibitor 174 255 IPR032675 -
Gabi2394g00025 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 182 - -
Gabi2394g00025 990 SMART LRR_typ_2 403 426 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 499 523 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 233 257 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 137 161 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 547 571 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 283 307 IPR003591 -
Gabi2394g00025 990 SMART LRR_typ_2 88 111 IPR003591 -
Gabi2394g00025 990 Gene3D Transferase(Phosphotransferase) domain 1 766 980 - -
Gabi2394g00025 990 SMART serkin_6 683 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2394g00025 990 FunFam Receptor-like protein kinase HSL1 667 765 - -
Gabi2394g00025 990 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 221 958 - -
Gabi2394g00025 990 Gene3D Ribonuclease Inhibitor 19 173 IPR032675 -
Gabi2394g00025 990 FunFam Receptor-like protein kinase HSL1 309 616 - -
Gabi2394g00025 990 Pfam Protein kinase domain 685 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2394g00025 990 Gene3D Ribonuclease Inhibitor 256 618 IPR032675 -
Gabi2394g00025 990 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Gabi2394g00025 990 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Gabi2394g00025 990 ProSiteProfiles Protein kinase domain profile. 683 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2394g00025 990 SUPERFAMILY Protein kinase-like (PK-like) 678 958 IPR011009 -
Gabi2394g00025 990 Gene3D Phosphorylase Kinase; domain 1 667 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00025 Gabi-Chr2394 195227 198323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00025 17 990 Receptor kinase-like Gene Family AT1G28440 58.207 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2394g00025 Pkinase 8.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00025 - - gmx:100778128 1320.84