Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00019 ATGGATGATGGAGAAATTTCAAATGGTAATTTCCCTCCTCAGAACCCAACATGTGGATCAAATAATCCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTTTAATGGCAACCAATAGATTCGTGTGTGAAATTTGTCTAAAGGGTTTCCAAAGGGATCAAAATCTTCAACTTCATCGACGTGGACATAACCTTCCTTGGAAGCTCAAGCAGAGGACAAGTAAAGAAGTAAGGAAGCGAGTTTATGTCTGTCCAGAGAAGACTTGTGTTCACCACCATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAATCAGATTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAACGCAAACATAAACAACCCATTGGGGTCTAACGTGGGTTACAGTGTCATGCAAAATTCCCTGGGGCCTAACATGGGAACCAATTTTTCTTCAATTTTCAAGCCAATTTCAAGCACTGATGAAACAATTAGTAATATTCAAACAACTAGAGGGCTATCCCTTTGGATGGCTCAAGCATCTCAAGCTCATGAGACAATGGTTAATACCAATTTGCATGAGATTCATCAACTTGGGAGGAACCCACTTGTTTCATGCTCAAATCCACCACCACCACCCTCTAATTATCAGCTAAATTGGGTGTTTGGTAATAAGCTTTCATCCAATGGAAGTCAAGAGCTAACTAGTACAACTTCACTTCCACTAGTCAATATTAATGTCAAGGATAACACAAACCAACTTATTAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCTCATCAAACAACCTCAGCAAACATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCAACTGACCCATCATTCCTTGGAAGCTTAGGTTTGAAATGCAATAGTCCAAGTCAAGATGGGAACAAATTTTGTGGGATATACGGTTCAAATTCATTGCTCACAAGTCACGGGAGTGAGCCAGAGAACTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGATGGCAAATGCAGAATGAAGAGAATGCATGGGGACAGACTAGGGATTTTCTTGGTGTTGGAGTGCGTCAAACCATTTGCCACCCTTCATCAATCAACGAATGGATTTTATTTGATCATGTATTGAAATGTCAAGTTTTAATTTCTTGGTTGTTTATTTTTCTCAATGAAAGGAAAAAATGTGATAATAAATGA 1437 0.4078 MDDGEISNGNFPPQNPTCGSNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNANINNPLGSNVGYSVMQNSLGPNMGTNFSSIFKPISSTDETISNIQTTRGLSLWMAQASQAHETMVNTNLHEIHQLGRNPLVSCSNPPPPPSNYQLNWVFGNKLSSNGSQELTSTTSLPLVNINVKDNTNQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSTDPSFLGSLGLKCNSPSQDGNKFCGIYGSNSLLTSHGSEPENYSGDLSQMPPTKRWQMQNEENAWGQTRDFLGVGVRQTICHPSSINEWILFDHVLKCQVLISWLFIFLNERKKCDNK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00019 478 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Gabi2394g00019 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Gabi2394g00019 478 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Gabi2394g00019 478 Gene3D Classic Zinc Finger 89 180 - -
Gabi2394g00019 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 443 IPR031140 -
Gabi2394g00019 478 MobiDBLite consensus disorder prediction 1 38 - -
Gabi2394g00019 478 FunFam protein indeterminate-domain 12-like 35 103 - -
Gabi2394g00019 478 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Gabi2394g00019 478 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00019 Gabi-Chr2394 178753 181061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00019 22 450 IDZ Gene Family AT1G03840 52.556 3.33e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2394g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00019 K25870 - gmx:100778666 677.552