Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00005 ATGACACTGGTTATCAGAGAGAGGAGACACAAACAAGCTCTAAGGCTTTCCTTACCAAAACCTTCAATTCCATTATCTGATTTCCCCCTCCAAACCCACATAACACCATCGTTGCCGCCATCCCCATCCTCCCATGTAGACTCTTCTCCAGGCATCAGGAACCTTTCAGACCTCGAGAAAGTAGCTGTACTTGGCCATGGCAATGGTGGCATAGTCTATAAAGTTCATCACAAGAAGAACAATTCTCTTTATGCATTGAAGGTCCTACGCTTCAATCAGAATGCCATTGGCATCCGTCAACCCGCTACACTCGAAGCTGAGATTCTTAAACGAGTGGATTCCCCTTATATAGTAAAGTGTCATGCAGTTTTTGATAATGGTGCATTGAGCAGTGATGCAGGTCATATTAGCTTTATTATGGAATACATGGAAGGAGGATCGTTGCATGATGTGTTGAGAGAACACCATAGACTCCCCGAGGAGGTGATTTCTGTCTTGGCTAATCGTGTGTTGGAAGGGTTGAACTATTTGCATGGCATGCACATTGTGCATAGAGATATTAAACCCTCAAACTTGCTTGTGAATGACAAGGGTGAGGTGAAGATTGCAGACTTTGGAGTCAGTCACGTAGTGGAAGGAAGGTTAGAGGAAACTGACTCCAACGCTGGTACGTGTGCCTACATGAGCCCTGAAAGAGTTGATCCAGAGAGATGGGGTGGTGAAAATGCAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTGGTGATGTTGGAATGTTTTATGGGTTATTTTCCCTTAATTGGTCCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATATGCTTTGGTGAGAAGCTGGAGATGCCAGAGAAGGCATCATCCCAGTTCCAAAATTTTGTCAGGAGGTGTCTTGAAAAGGATTGGAGGAAGAGAGCAACAGTGTTAGAGCTTCTTCACCACCCTTTTGTGAATACAAAGCATTGCTTTTCTAGCAAAGGGTTGGGTGATTTTGTTCTTCATGGGTGA 1035 0.4473 MTLVIRERRHKQALRLSLPKPSIPLSDFPLQTHITPSLPPSPSSHVDSSPGIRNLSDLEKVAVLGHGNGGIVYKVHHKKNNSLYALKVLRFNQNAIGIRQPATLEAEILKRVDSPYIVKCHAVFDNGALSSDAGHISFIMEYMEGGSLHDVLREHHRLPEEVISVLANRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRLEETDSNAGTCAYMSPERVDPERWGGENADEFAGDVWSMGVVMLECFMGYFPLIGPGQRPDWATLMCAICFGEKLEMPEKASSQFQNFVRRCLEKDWRKRATVLELLHHPFVNTKHCFSSKGLGDFVLHG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00005 344 FunFam Mitogen-activated protein kinase 2 145 337 - -
Gabi2394g00005 344 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Gabi2394g00005 344 PRINTS Tyrosine kinase catalytic domain signature 176 194 IPR001245 GO:0004672|GO:0006468
Gabi2394g00005 344 PRINTS Tyrosine kinase catalytic domain signature 140 153 IPR001245 GO:0004672|GO:0006468
Gabi2394g00005 344 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 43 328 - -
Gabi2394g00005 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Gabi2394g00005 344 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Gabi2394g00005 344 CDD PKc_MAPKK_plant_like 56 327 - -
Gabi2394g00005 344 ProSiteProfiles Protein kinase domain profile. 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2394g00005 344 SUPERFAMILY Protein kinase-like (PK-like) 30 330 IPR011009 -
Gabi2394g00005 344 FunFam Mitogen-activated protein kinase kinase 1 39 144 - -
Gabi2394g00005 344 Gene3D Transferase(Phosphotransferase) domain 1 53 337 - -
Gabi2394g00005 344 SMART serkin_6 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2394g00005 344 Pfam Protein kinase domain 59 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00005 Gabi-Chr2394 39100 40653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00005 1 329 MAP Kinase Kinase Gene Family AT1G32320 54.545 2.17e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi2394g00005 Pkinase 1.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00005 K20604 - gmx:100817973 562.377