Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2394g00004 ATGGACGGAGTGAGCGGCGGCGGAGACGGAAGCTCCACCCAGTTGCCGGCGCCGGCCCCGATTCCGAACGTGAACGCGCCGCCACCGTTTCTGAGCAAAACGTATGACATGGTGGATGACCCATCGACGGACGCTATCGTGTCATGGAGCGCAACCAACAACAGCTTCGTGGTTTGGGACCCACCCGAATTCGCAAGGGACCTTTTGCCTAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGACAGTTGAACACATATGGCTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTAGGCGAAAACCTGCCCATGGTCATAATCATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAAAATGTGCTCATGCAAGAGCTAGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAGCAATAGGCGTATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAAGAAGGTATTGCCGAAACAGAGCGTGCTGCCGCTCCTGATGGACAAATTGTAAAATATCAACCTCAGGGGAATGAAGCAGCAAAAGCAATGCTAAGACAGATCATGAAATGGGATACGTCTCATGTAGAATCTTTTAATAAAAACCCCGATAATTACTTGGTTGGTGATACTTCATCGTCATCCAGTGCAATGGACAGCAGCAGCTCTTCAAGCTGGACTTCTGGAGTAACTCTTCAAGAGATCCCTCCTGCTACAGTGCAGTCTTCTCATATTCCTGCTGCAACGGGGAATCAAGGGCACTTCCCCTCAACAGGCAAACCTGAAATTCTATCTGTACCGCAAGCTGCAGTTTCTGATAAAGTTGCAAAGGATGGAGCACATGAGGCACCTTCTATCCCTGTATCTCAAGCAGATGTCATCATGCCTGATCTTCCTTCAATAACAAAGTTAGAGACAGGAAATATTCTTGATATTCCTGAAGAAAATTATATGGTTCCAGAGACAGATGCGGGATATATGGATCCTACTTCACTGGGAGTAAGTGGGTCATTTTCTATGGATTTTGAAGGTATTTCACCCGACGTGGACATTGATGATTTGTTTGGCAATCCTTCTATTTGGGACGATCTTTTGCAAACTCCAGTTGCAGAGGATATCGAGACCAATGTTGCTGAAGAGTCCAAGGGGAATGAAGTGCAGCCAATGGAAAATGGATGGGACAAAACTCAACATATGGATCAACTTACTGAGCAGATGGGTCTTCTTTCTTCTGATGTAGATAGAGTTTGA 1506 0.4675 MDGVSGGGDGSSTQLPAPAPIPNVNAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQEGIAETERAAAPDGQIVKYQPQGNEAAKAMLRQIMKWDTSHVESFNKNPDNYLVGDTSSSSSAMDSSSSSSWTSGVTLQEIPPATVQSSHIPAATGNQGHFPSTGKPEILSVPQAAVSDKVAKDGAHEAPSIPVSQADVIMPDLPSITKLETGNILDIPEENYMVPETDAGYMDPTSLGVSGSFSMDFEGISPDVDIDDLFGNPSIWDDLLQTPVAEDIETNVAEESKGNEVQPMENGWDKTQHMDQLTEQMGLLSSDVDRV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2394g00004 501 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 302 IPR027725 -
Gabi2394g00004 501 Coils Coil 148 175 - -
Gabi2394g00004 501 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 MobiDBLite consensus disorder prediction 328 347 - -
Gabi2394g00004 501 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 MobiDBLite consensus disorder prediction 120 139 - -
Gabi2394g00004 501 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2394g00004 501 SUPERFAMILY "Winged helix" DNA-binding domain 26 119 IPR036390 -
Gabi2394g00004 501 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 Gene3D - 23 120 IPR036388 -
Gabi2394g00004 501 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2394g00004 501 FunFam Heat shock transcription factor 1 23 120 - -
Gabi2394g00004 501 MobiDBLite consensus disorder prediction 328 343 - -
Gabi2394g00004 501 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2394g00004 Gabi-Chr2394 32481 37439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2394g00004 6 495 HSF AT1G32330 55.400 3.54e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2394g00004 HSF_DNA-bind 4.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2394g00004 K09419 - gmx:100815121 803.897