Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2393g00013 ATGTGGGATCTCAATGACTCACCCGATAAGAGAAAGGATGATGAATCCGAAGGCTGTTCTTCCCTTAAGACTTCAATCGATGGGGATGATGATAAAGGAAAGAGGGTTGGATCTGTTTCCAATTCAAGCTCTTCAGCTGTGGTAATCGAAGACGGATCAGAAGAAGAAGAAGAAGGTGAGAGGGAGGGTAACAAAACTATGAAGAAAAGAAGCAGCAAAATATTCGGGTTCTCTGTGACCCACGATGAAGAGTACATGGACAGTGATCATCCACCTATGACTCGGCAATTTTTTCCGGTGGAGGAGCCTGATATGGCCGTTGCATCCGGTGGTAGAAGCTCTGCCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGTCAATCAGAAACACTTGGTGCTGGAAAATCAGTGGAAGTTTCACAACCCATGAAGAAGAGTCGACGAGGACCAAGGTCGAGGAGCTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCCATTAAGTTCCGAGGAGTAGAGGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGCAATCTGACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCAAGAGGAAGCTCAAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTCTATTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAGAATGAACTTAATTCTGAATCCACAGGTAACACTGCAGAACACAATTTGGATTTAAGTTTGGGAAATTCGAGTTCCAAGCCTAGCAATGGTCAAGCGTTGGGGAATCACTTAACAAATGCTGCAAATTATGATCAGCATCTGCCATCTGAATCTAATTGGCAGAATGGGGGAAACAAGCATAAGCTCGTGAATATACTACCAAAACCATGCATTAGAAGTAACAAGGAAGCAAATGGAAGAGATGTGCACGGAGAGAGTGAAGCATTGAGGATGCTAAGTCAAACTCACCTTCATTCTTCAGCCTCAAATGAAATGCAAAGATATGGTCTTTACAGGTCTCCTGGAGAGTCTCAAATGCTTCACAATTTTGCACATATTCACCAACCAAATTTTCATTTTCCCAGCAGCAGCAATGGAGGCCGTATTGGAAGTGAACTTTCGTTATCAATGACCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATGTAGCAACTGCTGCAGCATCATCAGGATTCCCACATCAGATTAGACCCTCTCATCAAGGGTGGCTGCAGAAAAATGGATTCCATACTCTCATGAGACCCTCTTGA 1527 0.442 MWDLNDSPDKRKDDESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSAVVIEDGSEEEEEGEREGNKTMKKRSSKIFGFSVTHDEEYMDSDHPPMTRQFFPVEEPDMAVASGGRSSAFPRAHWVGVKFCQSETLGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESTGNTAEHNLDLSLGNSSSKPSNGQALGNHLTNAANYDQHLPSESNWQNGGNKHKLVNILPKPCIRSNKEANGRDVHGESEALRMLSQTHLHSSASNEMQRYGLYRSPGESQMLHNFAHIHQPNFHFPSSSNGGRIGSELSLSMTDQQQWQSGPPHYVATAAASSGFPHQIRPSHQGWLQKNGFHTLMRPS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2393g00013 508 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Gabi2393g00013 508 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Gabi2393g00013 508 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Gabi2393g00013 508 MobiDBLite consensus disorder prediction 137 156 - -
Gabi2393g00013 508 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Gabi2393g00013 508 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 MobiDBLite consensus disorder prediction 313 347 - -
Gabi2393g00013 508 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2393g00013 508 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 MobiDBLite consensus disorder prediction 1 70 - -
Gabi2393g00013 508 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Gabi2393g00013 508 Pfam AP2 domain 248 297 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 403 - -
Gabi2393g00013 508 SUPERFAMILY DNA-binding domain 248 308 IPR016177 GO:0003677
Gabi2393g00013 508 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Gabi2393g00013 508 CDD AP2 157 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2393g00013 Gabi-Chr2393 156743 160437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2393g00013 1 508 AP2-EREBP Transcription Factor Family AT4G36920 53.832 1.31e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2393g00013 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2393g00013 K09284 - gmx:100792442 839.721