Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2393g00004 ATGGCATCCCTTCTCTTCATCTTTCTCTTCCTCTCTCTTTCCTCCGCCACCAACAACCACACCCTCCTCCTCAAACCACTCTCTCTGGAGATCCAACAAGCCTGCAAGGCCACACGATTCCCTCTCCAATGCCACTCCTCACTCACCCAATCCAAACACCTCCCTAACAACCCCACCCCTCTCCAAATCCTCCAATCCGCCATGGCAATTTCCTACGAAAACCTTAGCACCGCACGATCCATGGTTCAGTCCATCCTCGACGCCTCCGCAAACAACCGTACACGCGCCACCGTCGCCAAGAGCTGCCTCCAGGTCCTCCACTACTCCCATTACCGGACCTCCCTCGCCGCCGACGCCCTCCCCCGCGGCAACACCAAGGACTCCCGTGCATGGTTCAGCGCCGCCTTGGCCTACCAGTACAACTGCTGGTCCGGGTTGAAGTACGCGAACGACACCGCATCCGTCGCCGAAACGATGTCGTTTCTGGACTCCCTCACCGGCGTCTCCAGCAACGCGCTCAACATGATGGTGTCGTACGATCGCTTCGGGAACGACACCGCATTGTGGAGGCCGCCGTTCACGGAGCGCGACGGTTACTGGGAGGCTTCCGGGTCGGGAGAGTTCGGGTCCGGACCCGGGTTGCCCGCGAAACTTACGCCGGACGTTAAGGTGTGTAAGGACGGTGGCGAAGGTTGTTATAAGACGGTTCAGGAAGCGGTTAATGCGGCGCCGGATAACGTCAGCGTCGGTGAACGGTTGTTTGTGATACACATAAAGGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGGAAGAGGAATGTGGTGTTCTTGGGTGATGGCATTGGTAAAACTGTCATCACTGGGTCTGCAAACGTGGGGCTTCAGCCTGGGATGACAACCTACAACTCAGCCACCGTAGGGGTTGTTGGTGATGGATTCATGGCAAAGGATCTCACAATCCAAAACACGGCAGGTGCTAATGCTCACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTCATTGAGAATTGTGAATTCATAGGCAATCAAGATACCCTTTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGTATCATTGGCAATGTGGACTTCATCTTTGGAAACTCAGCTTCAATCTTCCAAGACTGCCAAATCCTTGTCCGGCCGAGGCAAACCAGGCCGAGGAAGGGCGAGAGCAACGCCATTACTGCGCATGGCAGGACAGACCCTGCTCAGTCAACAGGCTTTGTTTTCCAGAACTGCTTGGTTAATGGTACTGAGCAATATATGGAATTGTACTACAGCAAGCCTGAAGTGCACAAGAACTACCTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATTCTTGGAAGCCCTTATCACACCACAGGGTTGGATGCCATGGAGTGGGGATTTTGGGTTGAATACACTTTACTATGGGGAATTTGAGAACTCGGGACCTGGTTCTAATTTGACTCATAGGGTACCATGGAGTAGCCAGGTCCCGGCTGAGCATGTGTTCACGTATTCAGTGCACAGTTTCATTCAAGGAGATGATTGGATTAATCATCTCAGTTATTAG 1614 0.5242 MASLLFIFLFLSLSSATNNHTLLLKPLSLEIQQACKATRFPLQCHSSLTQSKHLPNNPTPLQILQSAMAISYENLSTARSMVQSILDASANNRTRATVAKSCLQVLHYSHYRTSLAADALPRGNTKDSRAWFSAALAYQYNCWSGLKYANDTASVAETMSFLDSLTGVSSNALNMMVSYDRFGNDTALWRPPFTERDGYWEASGSGEFGSGPGLPAKLTPDVKVCKDGGEGCYKTVQEAVNAAPDNVSVGERLFVIHIKEGVYEERVRVPLRKRNVVFLGDGIGKTVITGSANVGLQPGMTTYNSATVGVVGDGFMAKDLTIQNTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASIFQDCQILVRPRQTRPRKGESNAITAHGRTDPAQSTGFVFQNCLVNGTEQYMELYYSKPEVHKNYLGRPWKEYSRTVFIHSFLEALITPQGWMPWSGDFGLNTLYYGEFENSGPGSNLTHRVPWSSQVPAEHVFTYSVHSFIQGDDWINHLSY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2393g00004 537 Pfam Pectinesterase 221 529 IPR000070 GO:0030599|GO:0042545
Gabi2393g00004 537 CDD PMEI-like_3 34 176 - -
Gabi2393g00004 537 SMART PMEI_2 26 175 IPR006501 GO:0004857
Gabi2393g00004 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 178 IPR035513 -
Gabi2393g00004 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Gabi2393g00004 537 SUPERFAMILY Pectin lyase-like 222 534 IPR011050 -
Gabi2393g00004 537 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Gabi2393g00004 537 Gene3D - 215 537 IPR012334 -
Gabi2393g00004 537 PANTHER PECTINESTERASE 13 533 - -
Gabi2393g00004 537 FunFam Probable pectinesterase/pectinesterase inhibitor 51 29 178 - -
Gabi2393g00004 537 FunFam Pectinesterase 215 537 - -
Gabi2393g00004 537 NCBIfam pectinesterase inhibitor domain 3 175 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2393g00004 Gabi-Chr2393 62593 64727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2393g00004 27 531 Carbohydrate Esterase AT5G09760 64.775 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2393g00004 - - gmx:100802102 840.876