Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2393g00003 ATGAGATGCTTTGAATCCTGCAAGTGTTGTAAATATGTTCTGCAAGTTCCAGGACAGATAGATTTTTCATGGTTTTTGGAGAATATGCATAGGCTATGGAGTGTTGCCACCACAAGAGGAGGAGAACAAGAATTCGTAAATATGCTAGAACAGGAGAGCACACTGCATTGTTCAAAGAGAAGCATTACGGCTTTGGCAAGTGAGATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGAGAGATGAGCCTGAATATGCACCTGATAGTAATGCACCTGATAGTAAGCAATTGCGATCTCGATGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCTTATTTGGAAGGAAATGATAAATTAAAACCTGGTATGGGATTTTCTCCTAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATATTATGAACAAAGACTATAGAGTTCTGGATGCAACATTGGAATGGGACGAGGATGGAAGTTATGACAGGAAAATGTCACCGGGGTTTGAGGAATGGAAACATAACAGACATAGTCAATCCCCCCAAAATGGTTGGAGTAGGTCAGTCAGGAGTAGTCGGAGCCAGAGCCCTCCCCATGGACTTAGGTTTGATGCAGGAGTCAATGACAGAAATAGAATGAGGTCTGGAGGATCGACACTTCCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCAATGCCATTTTCTTCATCATGATAATCGAAATCATGAGGATAGTTGGGAAAGTAAGCACAGGGAAGGTGGAGCTCCCAGATATTCTACTCCCCACGAGAGTCGGGATCTTTCTCTTAAGAGTGGTAGATCTAGTGAGGCTTGTATTGATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCGTGCAAGTATGTGCATCATAACAATTCTGATGGATATGGCAAAATATCTGTGGATGAATTTACTAGAGAAAGGGAAATTGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATTGGCCAAAACGCAGTGGTGATACTCCTTGCAAATTTTTTGCTTATGGAAATTGTCGTAACGGTAAAAATTGTAGGTTTTCTCATGATAGGCAAGCATCTAGGAGCCCTAATAGAAGAGTAAGGGATGTTAGGTTGGCGAGCAACCCAGTTGGAGATCATCAGATGTTGGATAGATCAAATTTGAGCAATTCAGTTAGTCCCAATCGAAGGCTAAGAGATGATAGATGGGGTTTAGATGGCAATATGGTTGATGCAGATAAAGTTTGCGACAGTCCAAAGCGGAATGACACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGGAAGTATGGGTGCCACAGAGCCAGGATTCACTGCCTGGCCTGTGAAGGATGGATGGGGTTGTAGTTTAGATAAGAGCAGAGTGCACGGTGAACCACCATTTTTGAGTGATAAGAAGGAAGCTGACTGTTGGATAGCAGAAAATACTGGTGCCAAGATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTCAGGTGATGCTAAAATGTCTCCTGATTGGAATTATAGGGTGGGATCCTCCAACCATATTGAAGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGCTACTTATTTAGCTGCCTCCGAACATGACAGAATACAAGTCCTTCCAGGACAAGGATTTAATCAGAATGCACAGATTGCAAATCCTTTGCATTCTTCACTTGCAGTTGGACAGAGTCAAATGGCAGTTCCCATTCTTCCTTCAAGAGGAGGAATTGTTGATGGTATGCAGAACCAAGAAGTGTCTACTGAGAAAAAGTACACCGTTGAACCAAATATTATGGATGCAGGCATATCACAAGTTAGTTCAAGAAATCCTCCAATTCAGAATGTGGTAAACAAAGAACAGCTTGCTCAACTTACTGATCTCTCAGCCTCTCTGGCTCATATCCTCGGAGCAGGTCAGCAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACACTCCTTCCCTAGCAAAAACTGAAGTGCCTGCTATGCCTGTTTACAATACAATTGTCAAGCCAGATCCTGCTGTTGGATTCTCGAAGCAGTATGATCCAATGTGTGATGGTATGGAACCAAATATTGCTGATGCAAATGGGGTTCCCCCAGGCATTCCTCCAAGTAAAAAAATTGCAGAAGATGAAGTAGAAATTTCATCACGGTTGTCTAACACTGGGAGACAAATTTGTGGTGATTCTATTAAGGCTTCATACTCAGAGGAACTTGTCAAGAATGTTCATCCAATCCAGTTGCTGCCAGGTCAAAACACTGAGGTTACTAAGGATAACAAGGAAGTGGTAGCTGAGGAAAGGCAAAATTCTCAAGAATATCATAAAAATACAAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAAATGGTGAACCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGGTTCGTACATTTAAATTTGCTTTGGTAGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGTGCCCATATTCCTCAGACACAAGAGAAAATCGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2763 0.4227 MRCFESCKCCKYVLQVPGQIDFSWFLENMHRLWSVATTRGGEQEFVNMLEQESTLHCSKRSITALASEMSGSGRKRSSKWDLRDEPEYAPDSNAPDSKQLRSRWSSADVAGSNSSKWSYLEGNDKLKPGMGFSPKEPFSGGRGSNKDDIMNKDYRVLDATLEWDEDGSYDRKMSPGFEEWKHNRHSQSPQNGWSRSVRSSRSQSPPHGLRFDAGVNDRNRMRSGGSTLPCRDFAAGKCRRGSQCHFLHHDNRNHEDSWESKHREGGAPRYSTPHESRDLSLKSGRSSEACIDFAKGRCRMGASCKYVHHNNSDGYGKISVDEFTREREIDRRRRDSSFEQGGGHWPKRSGDTPCKFFAYGNCRNGKNCRFSHDRQASRSPNRRVRDVRLASNPVGDHQMLDRSNLSNSVSPNRRLRDDRWGLDGNMVDADKVCDSPKRNDTVAVSDTAKLVEDKSGSMGATEPGFTAWPVKDGWGCSLDKSRVHGEPPFLSDKKEADCWIAENTGAKMHGSQSIGTDIWSGDAKMSPDWNYRVGSSNHIEEEHGQNKHGITQGATYLAASEHDRIQVLPGQGFNQNAQIANPLHSSLAVGQSQMAVPILPSRGGIVDGMQNQEVSTEKKYTVEPNIMDAGISQVSSRNPPIQNVVNKEQLAQLTDLSASLAHILGAGQQLPQLYAALNSHDAKDTPSLAKTEVPAMPVYNTIVKPDPAVGFSKQYDPMCDGMEPNIADANGVPPGIPPSKKIAEDEVEISSRLSNTGRQICGDSIKASYSEELVKNVHPIQLLPGQNTEVTKDNKEVVAEERQNSQEYHKNTKENGPLENMEQNGEPDEAKKTKDMKGVRTFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 74 91 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 95 120 - -
Gabi2393g00003 920 Pfam CCCH-type zinc finger 353 373 IPR041367 -
Gabi2393g00003 920 ProSiteProfiles Zinc finger C3H1-type profile. 348 375 IPR000571 GO:0046872
Gabi2393g00003 920 ProSiteProfiles Zinc finger C3H1-type profile. 284 311 IPR000571 GO:0046872
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 801 834 - -
Gabi2393g00003 920 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 249 IPR000571 GO:0046872
Gabi2393g00003 920 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 69 919 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 66 149 - -
Gabi2393g00003 920 SMART c3hfinal6 226 250 IPR000571 GO:0046872
Gabi2393g00003 920 SMART c3hfinal6 285 310 IPR000571 GO:0046872
Gabi2393g00003 920 SMART c3hfinal6 348 374 IPR000571 GO:0046872
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 186 206 - -
Gabi2393g00003 920 Gene3D - 345 409 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 801 816 - -
Gabi2393g00003 920 Gene3D - 222 320 - -
Gabi2393g00003 920 Pfam RNA-binding, Nab2-type zinc finger 289 308 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 180 226 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 369 385 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 369 417 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 397 411 - -
Gabi2393g00003 920 MobiDBLite consensus disorder prediction 252 281 - -
Gabi2393g00003 920 SUPERFAMILY CCCH zinc finger 351 373 IPR036855 GO:0046872
Gabi2393g00003 920 ProSiteProfiles Zinc finger C3H1-type profile. 224 251 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2393g00003 Gabi-Chr2393 22107 35029 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2393g00003 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2393g00003 - K22909 gmx:100783856 1269.22