Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2393g00002 ATGAGATGCTTTGAATCCTGCAAGTGTTGTAAATATGTTCTGCAAGTTCCAGGACAGATAGATTTTTCATGGTTTTTGGAGAATATGCATAGGCTATGGAGTGTTGCCACCACAAGAGGAGGAGAACAAGAATTCGTAAATATGCTAGAACAGGAGAGCACACTGCATTGTTCAAAGAGAAGCATTACGGCTTTGGCAAGTGAGATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGAGAGATGAGCCTGAATATGCACCTGATAGTAATGCACCTGATAGTAAGCAATTGCGATCTCGATGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCTTATTTGGAAGGAAATGATAAATTAAAACCTGGTATGGGATTTTCTCCTAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATATTATGAACAAAGACTATAGAGTTCTGGATGCAACATTGGAATGGGACGAGGATGGAAGTTATGACAGGAAAATGTCACCGGGGTTTGAGGAATGGAAACATAACAGACATAGTCAATCCCCCCAAAATGGTTGGAGTAGGAGTAGTCGGAGCCAGAGCCCTCCCCATGGACTTAGGTTTGATGCAGGAGTCAATGACAGAAATAGAATGAGGTCTGGAGGATCGACACTTCCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCAATGCCATTTTCTTCATCATGATAATCGAAATCATGAGGATAGTTGGGAAAGTAAGCACAGGGAAGGTGGAGCTCCCAGATATTCTACTCCCCACGAGAGTCGGGATCTTTCTCTTAAGAGTGGTAGATCTAGTGAGGCTTGTATTGATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCGTGCAAGTATGTGCATCATAACAATTCTGATGGATATGGCAAAATATCTGTGGATGAATTTACTAGAGAAAGGGAAATTGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATTGGCCAAAACGCAGTGGTGATACTCCTTGCAAATTTTTTGCTTATGGAAATTGTCGTAACGGTAAAAATTGTAGGTTTTCTCATGATAGGCAAGCATCTAGGAGCCCTAATAGAAGAGTAAGGGATGTTAGGTTGGCGAGCAACCCAGTTGGAGATCATCAGATGTTGGATAGATCAAATTTGAGCAATTCAGTTAGTCCCAATCGAAGGCTAAGAGATGATAGATGGGGTTTAGATGGCAATATGGTTGATGCAGATAAAGTTTGCGACAGTCCAAAGCGGAATGACACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGGAAGTATGGGTGCCACAGAGCCAGGATTCACTGCCTGGCCTGTGAAGGATGGATGGGGTTGTAGTTTAGATAAGAGCAGAGTGCACGGTGAACCACCATTTTTGAGTGATAAGAAGGAAGCTGACTGTTGGATAGCAGAAAATACTGGTGCCAAGATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTCAGGTGATGCTAAAATGTCTCCTGATTGGAATTATAGGGTGGGATCCTCCAACCATATTGAAGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGCTACTTATTTAGCTGCCTCCGAACATGACAGAATACAAGTCCTTCCAGGACAAGGATTTAATCAGAATGCACAGATTGCAAATCCTTTGCATTCTTCACTTGCAGTTGGACAGAGTCAAATGGCAGTTCCCATTCTTCCTTCAAGAGGAGGAATTGTTGATGGTATGCAGAACCAAGAAGTGTCTACTGAGAAAAAGTACACCGTTGAACCAAATATTATGGATGCAGGCATATCACAAGTTAGTTCAAGAAATCCTCCAATTCAGAATGTGGTAAACAAAGAACAGCTTGCTCAACTTACTGATCTCTCAGCCTCTCTGGCTCATATCCTCGGAGCAGGTCAGCAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACACTCCTTCCCTAGCAAAAACTGAAGTGCCTGCTATGCCTGTTTACAATACAATTGTCAAGCCAGATCCTGCTGTTGGATTCTCGAAGCAGTATGATCCAATGTGTGATGGTATGGAACCAAATATTGCTGATGCAAATGGGGTTCCCCCAGGCATTCCTCCAAGTAAAAAAATTGCAGAAGATGAAGTAGAAATTTCATCACGGTTGTCTAACACTGGGAGACAAATTTGTGGTGATTCTATTAAGGCTTCATACTCAGAGGAACTTGTCAAGAATGTTCATCCAATCCAGTTGCTGCCAGGTCAAAACACTGAGGTTACTAAGGATAACAAGGAAGTGGTAGCTGAGGAAAGGCAAAATTCTCAAGAATATCATAAAAATACAAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAAATGGTGAACCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGGTTCGTACATTTAAATTTGCTTTGGTAGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGTGCCCATATTCCTCAGACACAAGAGAAAATCGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2754 0.4223 MRCFESCKCCKYVLQVPGQIDFSWFLENMHRLWSVATTRGGEQEFVNMLEQESTLHCSKRSITALASEMSGSGRKRSSKWDLRDEPEYAPDSNAPDSKQLRSRWSSADVAGSNSSKWSYLEGNDKLKPGMGFSPKEPFSGGRGSNKDDIMNKDYRVLDATLEWDEDGSYDRKMSPGFEEWKHNRHSQSPQNGWSRSSRSQSPPHGLRFDAGVNDRNRMRSGGSTLPCRDFAAGKCRRGSQCHFLHHDNRNHEDSWESKHREGGAPRYSTPHESRDLSLKSGRSSEACIDFAKGRCRMGASCKYVHHNNSDGYGKISVDEFTREREIDRRRRDSSFEQGGGHWPKRSGDTPCKFFAYGNCRNGKNCRFSHDRQASRSPNRRVRDVRLASNPVGDHQMLDRSNLSNSVSPNRRLRDDRWGLDGNMVDADKVCDSPKRNDTVAVSDTAKLVEDKSGSMGATEPGFTAWPVKDGWGCSLDKSRVHGEPPFLSDKKEADCWIAENTGAKMHGSQSIGTDIWSGDAKMSPDWNYRVGSSNHIEEEHGQNKHGITQGATYLAASEHDRIQVLPGQGFNQNAQIANPLHSSLAVGQSQMAVPILPSRGGIVDGMQNQEVSTEKKYTVEPNIMDAGISQVSSRNPPIQNVVNKEQLAQLTDLSASLAHILGAGQQLPQLYAALNSHDAKDTPSLAKTEVPAMPVYNTIVKPDPAVGFSKQYDPMCDGMEPNIADANGVPPGIPPSKKIAEDEVEISSRLSNTGRQICGDSIKASYSEELVKNVHPIQLLPGQNTEVTKDNKEVVAEERQNSQEYHKNTKENGPLENMEQNGEPDEAKKTKDMKGVRTFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 74 91 - -
Gabi2393g00002 917 ProSiteProfiles Zinc finger C3H1-type profile. 345 372 IPR000571 GO:0046872
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 95 120 - -
Gabi2393g00002 917 SUPERFAMILY CCCH zinc finger 348 370 IPR036855 GO:0046872
Gabi2393g00002 917 Pfam CCCH-type zinc finger 350 370 IPR041367 -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 186 203 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 180 223 - -
Gabi2393g00002 917 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 69 916 - -
Gabi2393g00002 917 ProSiteProfiles Zinc finger C3H1-type profile. 221 248 IPR000571 GO:0046872
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 66 149 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 249 278 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 367 414 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 367 382 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 798 831 - -
Gabi2393g00002 917 SMART c3hfinal6 345 371 IPR000571 GO:0046872
Gabi2393g00002 917 SMART c3hfinal6 282 307 IPR000571 GO:0046872
Gabi2393g00002 917 SMART c3hfinal6 223 247 IPR000571 GO:0046872
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 798 813 - -
Gabi2393g00002 917 Pfam RNA-binding, Nab2-type zinc finger 286 305 - -
Gabi2393g00002 917 Gene3D - 219 317 - -
Gabi2393g00002 917 MobiDBLite consensus disorder prediction 394 408 - -
Gabi2393g00002 917 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 246 IPR000571 GO:0046872
Gabi2393g00002 917 ProSiteProfiles Zinc finger C3H1-type profile. 281 308 IPR000571 GO:0046872
Gabi2393g00002 917 Gene3D - 342 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2393g00002 Gabi-Chr2393 22107 35029 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2393g00002 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2393g00002 - K22909 gmx:100783856 1264.21