Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2393g00001 ATGAGGTCTGGAGGATCGACACTTCCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCAATGCCATTTTCTTCATCATGATAATCGAAATCATGAGGATAGTTGGGAAAGTAAGCACAGGGAAGGTGGAGCTCCCAGATATTCTACTCCCCACGAGAGTCGGGATCTTTCTCTTAAGAGTGGTAGATCTAGTGAGGCTTGTATTGATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCGTGCAAGTATGTGCATCATAACAATTCTGATGGATATGGCAAAATATCTGTGGATGAATTTACTAGAGAAAGGGAAATTGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATTGGCCAAAACGCAGTGGTGATACTCCTTGCAAATTTTTTGCTTATGGAAATTGTCGTAACGGTAAAAATTGTAGGTTTTCTCATGATAGGCAAGCATCTAGGAGCCCTAATAGAAGAGTAAGGGATGTTAGGTTGGCGAGCAACCCAGTTGGAGATCATCAGATGTTGGATAGATCAAATTTGAGCAATTCAGTTAGTCCCAATCGAAGGCTAAGAGATGATAGATGGGGTTTAGATGGCAATATGGTTGATGCAGATAAAGTTTGCGACAGTCCAAAGCGGAATGACACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGGAAGTATGGGTGCCACAGAGCCAGGATTCACTGCCTGGCCTGTGAAGGATGGATGGGGTTGTAGTTTAGATAAGAGCAGAGTGCACGGTGAACCACCATTTTTGAGTGATAAGAAGGAAGCTGACTGTTGGATAGCAGAAAATACTGGTGCCAAGATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTCAGGTGATGCTAAAATGTCTCCTGATTGGAATTATAGGGTGGGATCCTCCAACCATATTGAAGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGCTACTTATTTAGCTGCCTCCGAACATGACAGAATACAAGTCCTTCCAGGACAAGGATTTAATCAGAATGCACAGATTGCAAATCCTTTGCATTCTTCACTTGCAGTTGGACAGAGTCAAATGGCAGTTCCCATTCTTCCTTCAAGAGGAGGAATTGTTGATGGTATGCAGAACCAAGAAGTGTCTACTGAGAAAAAGTACACCGTTGAACCAAATATTATGGATGCAGGCATATCACAAGTTAGTTCAAGAAATCCTCCAATTCAGAATGTGGTAAACAAAGAACAGCTTGCTCAACTTACTGATCTCTCAGCCTCTCTGGCTCATATCCTCGGAGCAGGTCAGCAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACACTCCTTCCCTAGCAAAAACTGAAGTGCCTGCTATGCCTGTTTACAATACAATTGTCAAGCCAGATCCTGCTGTTGGATTCTCGAAGCAGTATGATCCAATGTGTGATGGTATGGAACCAAATATTGCTGATGCAAATGGGGTTCCCCCAGGCATTCCTCCAAGTAAAAAAATTGCAGAAGATGAAGTAGAAATTTCATCACGGTTGTCTAACACTGGGAGACAAATTTGTGGTGATTCTATTAAGGCTTCATACTCAGAGGAACTTGTCAAGAATGTTCATCCAATCCAGTTGCTGCCAGGTCAAAACACTGAGGTTACTAAGGATAACAAGGAAGTGGTAGCTGAGGAAAGGCAAAATTCTCAAGAATATCATAAAAATACAAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAAATGGTGAACCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGGTTCGTACATTTAAATTTGCTTTGGTAGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGTGCCCATATTCCTCAGACACAAGAGAAAATCGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2103 0.4208 MRSGGSTLPCRDFAAGKCRRGSQCHFLHHDNRNHEDSWESKHREGGAPRYSTPHESRDLSLKSGRSSEACIDFAKGRCRMGASCKYVHHNNSDGYGKISVDEFTREREIDRRRRDSSFEQGGGHWPKRSGDTPCKFFAYGNCRNGKNCRFSHDRQASRSPNRRVRDVRLASNPVGDHQMLDRSNLSNSVSPNRRLRDDRWGLDGNMVDADKVCDSPKRNDTVAVSDTAKLVEDKSGSMGATEPGFTAWPVKDGWGCSLDKSRVHGEPPFLSDKKEADCWIAENTGAKMHGSQSIGTDIWSGDAKMSPDWNYRVGSSNHIEEEHGQNKHGITQGATYLAASEHDRIQVLPGQGFNQNAQIANPLHSSLAVGQSQMAVPILPSRGGIVDGMQNQEVSTEKKYTVEPNIMDAGISQVSSRNPPIQNVVNKEQLAQLTDLSASLAHILGAGQQLPQLYAALNSHDAKDTPSLAKTEVPAMPVYNTIVKPDPAVGFSKQYDPMCDGMEPNIADANGVPPGIPPSKKIAEDEVEISSRLSNTGRQICGDSIKASYSEELVKNVHPIQLLPGQNTEVTKDNKEVVAEERQNSQEYHKNTKENGPLENMEQNGEPDEAKKTKDMKGVRTFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2393g00001 700 SUPERFAMILY CCCH zinc finger 131 153 IPR036855 GO:0046872
Gabi2393g00001 700 Gene3D - 5 100 - -
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 581 596 - -
Gabi2393g00001 700 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Gabi2393g00001 700 SMART c3hfinal6 65 90 IPR000571 GO:0046872
Gabi2393g00001 700 SMART c3hfinal6 6 30 IPR000571 GO:0046872
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 177 191 - -
Gabi2393g00001 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 8 29 IPR000571 GO:0046872
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 33 61 - -
Gabi2393g00001 700 Pfam CCCH-type zinc finger 133 153 IPR041367 -
Gabi2393g00001 700 Pfam RNA-binding, Nab2-type zinc finger 69 88 - -
Gabi2393g00001 700 ProSiteProfiles Zinc finger C3H1-type profile. 4 31 IPR000571 GO:0046872
Gabi2393g00001 700 ProSiteProfiles Zinc finger C3H1-type profile. 64 91 IPR000571 GO:0046872
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 150 197 - -
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 150 165 - -
Gabi2393g00001 700 MobiDBLite consensus disorder prediction 581 614 - -
Gabi2393g00001 700 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 2 699 - -
Gabi2393g00001 700 Gene3D - 125 190 - -
Gabi2393g00001 700 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2393g00001 Gabi-Chr2393 22107 35029 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2393g00001 zf-CCCH 9.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2393g00001 - K22909 gmx:100783856 1048.5