Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2392g00040 ATGGCTTCTGCAGATGTTGAGTACAGATGCTTTGTTGGTGGGCTCGCATGGGCCACCGACAACGATGCTCTCGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTTGAATCGAAGATCATTAACGATCGCGAGACTGGAAGGTCAAGAGGTTTCGGATTCGTGACTTTCGCCTCTGAGCAGGCGATGAGGGATGCGATCGATGGGATGAACGGCCAGAACCTCGACGGCCGTAACATCACTGTGAACGAAGCTCAGTCCCGTGGCGGCGGCGGCGGCGGAGGTTTTGGAGGCGGAGGTGGTGGCTACGGAAGTGGTGGCGGCGGCGGCGGTTATGGTGGAGGCAGAGACCGTGGCTATGGTGATGGTGGATCCCGCTACTCTCGTGGCGGCGGCGGTGATGGTGGAAGCTGGAGGAGTTAG 420 0.5905 MASADVEYRCFVGGLAWATDNDALEKAFSPYGEIVESKIINDRETGRSRGFGFVTFASEQAMRDAIDGMNGQNLDGRNITVNEAQSRGGGGGGGFGGGGGGYGSGGGGGGYGGGRDRGYGDGGSRYSRGGGGDGGSWRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2392g00040 139 Gene3D - 2 103 IPR012677 -
Gabi2392g00040 139 SUPERFAMILY RNA-binding domain, RBD 8 111 IPR035979 GO:0003676
Gabi2392g00040 139 MobiDBLite consensus disorder prediction 81 139 - -
Gabi2392g00040 139 PANTHER GEO13361P1-RELATED 3 132 - -
Gabi2392g00040 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gabi2392g00040 139 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gabi2392g00040 139 CDD RRM2_NsCP33_like 9 84 - -
Gabi2392g00040 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2392g00040 Gabi-Chr2392 292841 293879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2392g00040 2 92 C2H2 Transcription Factor Family AT2G19380 34.783 7.84e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2392g00040 - K13195 ccaj:109800681 163.31