Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2392g00039 ATGGCTTCTGCAGATGTTGAGTACAGATGCTTTGTTGGTGGGCTCGCATGGGCCACCGACAACGATGCTCTCGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTTGAATCGAAGATCATTAACGATCGCGAGACTGGAAGGTCAAGAGGTTTCGGATTCGTGACTTTCGCCTCTGAGCAGGCGATGAGGGATGCGATCGATGGGATGAACGGCCAGAACCTCGACGGCCGTAACATCACTGTGAACGAAGCTCAGTCCCGTGGCGGCGGCGGCGGCGGAGGTTTTGGAGGCGGAGGTGGTGGTGGATACAGCCGCGGAGGCGGTGGCTACGGAAGTGGTGGCGGCGGCGGCGGTTATGGTGGAGGCAGAGACCGTGGCTATGGTGATGGTGGATCCCGCTACTCTCGTGGCGGCGGCGGTGATGGTGGAAGCTGGAGGAGTTAG 444 0.5968 MASADVEYRCFVGGLAWATDNDALEKAFSPYGEIVESKIINDRETGRSRGFGFVTFASEQAMRDAIDGMNGQNLDGRNITVNEAQSRGGGGGGGFGGGGGGGYSRGGGGYGSGGGGGGYGGGRDRGYGDGGSRYSRGGGGDGGSWRS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2392g00039 147 Gene3D - 2 104 IPR012677 -
Gabi2392g00039 147 MobiDBLite consensus disorder prediction 82 147 - -
Gabi2392g00039 147 PANTHER GEO13361P1-RELATED 3 140 - -
Gabi2392g00039 147 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gabi2392g00039 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gabi2392g00039 147 CDD RRM2_NsCP33_like 9 84 - -
Gabi2392g00039 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gabi2392g00039 147 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2392g00039 Gabi-Chr2392 292841 293879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2392g00039 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 3.11e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2392g00039 - K13195 ccaj:109800681 163.31