Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2392g00036 ATGGTGGATCAACTTAACATAGTATCGTTTGTGTTCTTGTTCTTGTTGCTGTTTAAGTTTCAATTCACATTGGAGCAAATTGAGCCACTGAGTTCACCTACTGAGCGAGCAGCACTGCTGGAACTTCGATCTTCTCTGGGCTTGAGGAGCAAGGAATGGCCAAGAAAAGCTGACCCTTGTTTAAACTGGAATGGTGTTAGGTGCCAAAATGGTCGAGTTGTTGCCATCAATATATCTGGCTTTAGAAGAACCAGGCTTGGGAAGAAAAATCCACAATTTGCTGTGGAAGCCTTGGCCAATTTCACCCTATTGGAGTCCTTCAATGCCTCCAATTTTCTGCTCCCTGATCCTATCCCTGACTGGTTTGGCCAACAGCTCTCTTCACTTCGGGTGCTTGATCTTCGTTCTTGCTCCATCAATGGTTCTATTCCTCCCAGTCTTGGGAATTTAACCAGCCTCACTAGCCTCTATTTGTCTGATAACAAACTTACTGGGATACTTCCTATTAGTTTGGGTCAACTGTTAGCAATTTCAGTGCTTGAACTTTCCCATAATTCTCTTAGTGGATCCCTGCCGGCATCGATTTTCTCTCTTCGGAATCTTTCTTCCCTTGACATTTCTGCCAATTTTTTATCCGGGTCGATTCCCCCAGCCATTGGGGCCCTCTCCGAGTTACAATACTTGAATCTATCCAACAATGACCTAACTTCTTTTATACCAGCAGAATTGGGGGATCTAAGTGGCTTAGTTGACCTTGATCTTAGTGAGAATTCTTTTTCTGGTGCTGTGCCCTCAAATTTGAAAGGGTTTAGGAACATGCAGAGATTGAATCTTGGGAATAATATACTTGATGGACCTCTGCCAGAGGACCTGTTTACTAATTCATCACAGTTTCTGTTCATAATGCTGAGACAGAATAATTTCACTGGTGCTTTGCCTGTGGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTCGATGTCTCTAGCAATAACTTCACTGGTCAGCTTCCTAATTCTAGTTTCATTGCTAATTCTACTGTTGCGGAGCTCAATATTTCTCATAATAAGTTTTATGGAGGCCTCACTCCTCTGTTAAGAAGATTCGGTTTCATTGATCTGTCAAGCAATTATTTTGAGGGCAGGGTTCTGGACTTCATGCTTAATGCATCTGTAGATAGCAATTGCCTCCAAAATGTGACCGATCAGAGGACACCAGTAGAATGTGCATCATTTTATGCTGAGAGGGGCCTCACTTTTGATAATTTTGGACGTCCAAATTCAACAGGTGCTCCTGCAGCAAAAGGCTCTGGGAAGAGCAATAAAAAAAAGATAATATTGGCAGCAGTCTTGGGTGGGCTGGGTTTAATTGCACTTTTGTTGTTACTCGTACTGCTGCTTCTATGCATTCGAAAAAAGGGTAATTCAAATCAAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTTCTCCACAACCTGGCGAACTAATTAACTTTTCTAGTGTTGGAGACTCATTTACATATCATCAGCTGCTCCAGGCCACAGGTGACTTCAATGATACAAATCTTATCAAACATGGTCACACTGGGGATCTCTTTAATGGTGTTTTGGAAAGTGGGATTCCTGTAGTCATCAAAAGGATTGACATTCGTTCAACTAAAAAGGATGCTTATTTATTGGAATTGGAATTTTTTAATAAGGTTTCACATCCTAGATTTGTTCCCCTGCTGGGTCATTGCTTAGAAAACGAGAATGAGAAGTTCCTGGTTTATAAACATATGCTAAATAGGGACTTGTCAAACTGCTTGTACTACAGAAAAACTACATCTGAAGATGGTAGCTTGCAGTCATTGGACTGGATAACAAGGTTGAAAATTGCCATTGGAGCAGCAGAGGCCCTATCTTATCTGCATCATGAATGTAATCCGCCCTTTGTTCACAGAGATATCCAAGCGAGCAGTATACTTCTAGATGATAAATATGAAGTTCGGTTAGGAAGTCTAAGTGAAGCCTGCCCTCAAGATGTGGATACTCATCAAAGCAAAATCACCCGGTTGCTGCGGTTGCCCCAGTCCTCTGAACACGGCACTCATGGTGCATCAACATCAATTTGTGCCTATGACGTGTATTGTTTTGGGAAAGTATTACTTGAGCTGGTGACCGGTAAGCTGGGAATTAGTGCATCCAGTGATGCTGAACTAAAGCAATGGTTGGAGCAAATGCTACCTTGTATTAGTATTTACGACAAGGAGCTTGTGACAAAAATAGTGGATCCATCTCTGATTGTTGATGAGGATTTATTAGAGGAAGTGTGGGCAGTGGCCATAGTTTCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCTATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTCAAAGTTGTAAGGGAAGAAAATTCCAGTTCTGCAAGACTCAGAGCAACCTCTTCTAGAGGCTCTTGGAATGCTGCATTGTTTGGTAGTTGGCGTCAGAGTTCATCTGATGTAACAGTAATGCCGGCAGCCTCAGGTACAAGAGTAGAAGGAGGGAGTACTTTAAAGCGTTCAGGAACTACTGGCTCACAGGGTAGTTTCCTCAATGCTGGGGGTGATGTTTCATCCTCCCTTACACGTCATTCAAGGGAGATATTCCCTGAACCTTCTGGAGTTCAAGATGTAGAGAGGCAGGAGCAGGAGTAG 2715 0.4306 MVDQLNIVSFVFLFLLLFKFQFTLEQIEPLSSPTERAALLELRSSLGLRSKEWPRKADPCLNWNGVRCQNGRVVAINISGFRRTRLGKKNPQFAVEALANFTLLESFNASNFLLPDPIPDWFGQQLSSLRVLDLRSCSINGSIPPSLGNLTSLTSLYLSDNKLTGILPISLGQLLAISVLELSHNSLSGSLPASIFSLRNLSSLDISANFLSGSIPPAIGALSELQYLNLSNNDLTSFIPAELGDLSGLVDLDLSENSFSGAVPSNLKGFRNMQRLNLGNNILDGPLPEDLFTNSSQFLFIMLRQNNFTGALPVELWSLPRLSFLDVSSNNFTGQLPNSSFIANSTVAELNISHNKFYGGLTPLLRRFGFIDLSSNYFEGRVLDFMLNASVDSNCLQNVTDQRTPVECASFYAERGLTFDNFGRPNSTGAPAAKGSGKSNKKKIILAAVLGGLGLIALLLLLVLLLLCIRKKGNSNQRGNGVGPAPAGGSSPQPGELINFSSVGDSFTYHQLLQATGDFNDTNLIKHGHTGDLFNGVLESGIPVVIKRIDIRSTKKDAYLLELEFFNKVSHPRFVPLLGHCLENENEKFLVYKHMLNRDLSNCLYYRKTTSEDGSLQSLDWITRLKIAIGAAEALSYLHHECNPPFVHRDIQASSILLDDKYEVRLGSLSEACPQDVDTHQSKITRLLRLPQSSEHGTHGASTSICAYDVYCFGKVLLELVTGKLGISASSDAELKQWLEQMLPCISIYDKELVTKIVDPSLIVDEDLLEEVWAVAIVSRSCLNPKPSRRPPMRYVLKALENPFKVVREENSSSARLRATSSRGSWNAALFGSWRQSSSDVTVMPAASGTRVEGGSTLKRSGTTGSQGSFLNAGGDVSSSLTRHSREIFPEPSGVQDVERQEQE 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2392g00036 904 FunFam Putative LRR receptor-like serine/threonine-protein kinase 595 820 - -
Gabi2392g00036 904 Gene3D Transferase(Phosphotransferase) domain 1 595 821 - -
Gabi2392g00036 904 SUPERFAMILY L domain-like 59 361 - -
Gabi2392g00036 904 Pfam Protein tyrosine and serine/threonine kinase 525 741 IPR001245 GO:0004672|GO:0006468
Gabi2392g00036 904 FunFam Predicted protein 490 594 - -
Gabi2392g00036 904 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Gabi2392g00036 904 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Gabi2392g00036 904 MobiDBLite consensus disorder prediction 848 904 - -
Gabi2392g00036 904 ProSiteProfiles Protein kinase domain profile. 519 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2392g00036 904 ProSiteProfiles Leucine-rich repeat profile. 224 247 IPR001611 GO:0005515
Gabi2392g00036 904 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Gabi2392g00036 904 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Gabi2392g00036 904 ProSiteProfiles Leucine-rich repeat profile. 152 173 IPR001611 GO:0005515
Gabi2392g00036 904 SMART LRR_typ_2 319 343 IPR003591 -
Gabi2392g00036 904 SMART LRR_typ_2 270 294 IPR003591 -
Gabi2392g00036 904 SMART LRR_typ_2 150 173 IPR003591 -
Gabi2392g00036 904 SMART LRR_typ_2 222 246 IPR003591 -
Gabi2392g00036 904 SMART LRR_typ_2 174 198 IPR003591 -
Gabi2392g00036 904 SMART LRR_typ_2 126 149 IPR003591 -
Gabi2392g00036 904 Gene3D Ribonuclease Inhibitor 193 404 IPR032675 -
Gabi2392g00036 904 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Gabi2392g00036 904 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 32 191 - -
Gabi2392g00036 904 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 178 801 - -
Gabi2392g00036 904 MobiDBLite consensus disorder prediction 854 886 - -
Gabi2392g00036 904 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 292 424 - -
Gabi2392g00036 904 SUPERFAMILY Protein kinase-like (PK-like) 497 800 IPR011009 -
Gabi2392g00036 904 FunFam Leucine-rich repeat receptor protein kinase EMS1 192 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2392g00036 Gabi-Chr2392 256789 262716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2392g00036 34 692 Miscellaneous Gene Families AT2G16250 56.972 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Gabi2392g00036 PK_Tyr_Ser-Thr 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2392g00036 - - gmx:100805769 1277.31