Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2392g00035 ATGTTTTTTTCATGTCAAAAATACAACCTTTACATTCCTTGCTCTTCTGTTCCACTCTGCAACCCAAGATGCTGCATTGTCATGTGCCAAAACCCACATGCCCCAAATGAACAACAACCCATTCTCCGCAAACACAATTCCAAATCCACAGCCTTTCTCCTTCACCACCTTTCCCACAAGGATGAGGATGAACATGATTCACATGAACATCATCACCACTCTCACCAACTCACTCCAAAATCCAGTGACCTGCAAGACCCTATGCCCCATGAAGAAAAGGTGAAGCTTTTGGAACTTTCCCTTGTCAGGAAAAGGACCCCTCAGTTTCCTGGCTCCATCTATGCTCAGTCCCCAAGCGACCCTGATGTGGGTTCTTCTCTGCCTCCTCTGCGCACTCTGTTTCAATCAAGTGCTCTCAGCGATGATGATGATGATGATGATGATGAGGAGGAGGAGATGGTCATGCGGGCTCTTCAGATTCGCAGGAAGGTGACTGAGGAGGTTCTAAAAGAAGCTATGCGAAAAGGAAAGTTTGGAATCACATACACTACCAATTTGGTTAGCAGGGTGCCTGGTTTCATCGATTACATCATGATTGAAGCTGCTAACTTGAAAAGGTTACAGGAATATTCACACTCCACCTTCAATTTACGCGCCAAAACCGTCATTGATGATTCCCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATGCACTGTCGTATCCTCAGATAGCAAAGCTCATTTTGATGTCAAGAGGAAAACTTGAGTCCATAAGGAATTGTGTTGAGTGGTTGAAGTCGGTGCATGTGAAAGGAGAATATCTTGGGCTTTCACTCTTGAAGGGTGGAGAGAATATTTTGCAACGCAGCAATGAGGAGCTGGATGAGATTGTTTTGTATTTAGAGTCCAATGGAGTCAGGAGGGAGTGGATGGGTTATGTCATGAGTCGATGTCCTCAATTGTTGTCTTACAGCTTAGAAGAAGTGAAGAATCGTGCGCAGTTCTATTTTGATATGGGTTTAAATGAGAAGGATTTTGGCACAATGGTTTTTGATTATCCTAAAGCACTTGGTTACTTTACTCTGGAAGTAATGAACCAAAAGGTTAATTACTTAAAAGAATTTGGGCTTCAAAGCAATGATGTTGGCAGATTGCTAGCATTTAGGCCACAATTGATGGGGTGCAGCATTGAGGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATCACCCGAGATGGTATGCGGAGAATGCTTACCATTAAACCAATGGTCTTTTGTACAGACTTGCAAATGACTATTGCGCCAAAGGTACGGTTTTTTCAGGACATAGGGGTTCGAGATGATGCAATTGGCAACATGCTTGTAAAGTTTCCTACTCTACTCACTTACAGCCTGTACAAGAAGATTAGACCAGTGGTTATATTCTTGATGACCAAAGCTGGGGTAAGTGAGAAAGATATTGGCAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCGTAGTACATAAGCTTGAAGTAAATGTAAAATATTTTTTGTCGCTTGGCATACGTATTAAGCAATTGGGTGAGATGATTGCTGATTTCCCGATGCTGCTCAGATACAATATAGATGTCCTTTGTCCCAAGTATAGTTATTTGCGGAAAACCATGGTCCGGCCTTTGCAAGATGTTATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGATGGTCGAATTATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATATTAAGCTAAGATACATGTTGGCTAGCTCTGATGAAGAATTCAAGAAAATGGTCAATTCTACAATTAGAAAGCGCCAAAGATTTGAACCTGCTGTCATTAAGGAGGGTACTACTCATCTTCAATCTGGTATTGCTGGGGATATTACTACACCCCAGACATGTACAAATTGA 1947 0.4212 MFFSCQKYNLYIPCSSVPLCNPRCCIVMCQNPHAPNEQQPILRKHNSKSTAFLLHHLSHKDEDEHDSHEHHHHSHQLTPKSSDLQDPMPHEEKVKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFQSSALSDDDDDDDDEEEEMVMRALQIRRKVTEEVLKEAMRKGKFGITYTTNLVSRVPGFIDYIMIEAANLKRLQEYSHSTFNLRAKTVIDDSQVVPLIRWLKHNALSYPQIAKLILMSRGKLESIRNCVEWLKSVHVKGEYLGLSLLKGGENILQRSNEELDEIVLYLESNGVRREWMGYVMSRCPQLLSYSLEEVKNRAQFYFDMGLNEKDFGTMVFDYPKALGYFTLEVMNQKVNYLKEFGLQSNDVGRLLAFRPQLMGCSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCTDLQMTIAPKVRFFQDIGVRDDAIGNMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVSEKDIGKVVALGPELLGCSVVHKLEVNVKYFLSLGIRIKQLGEMIADFPMLLRYNIDVLCPKYSYLRKTMVRPLQDVIEFPRFFSYSLDGRIIPRHKVLVENQINIKLRYMLASSDEEFKKMVNSTIRKRQRFEPAVIKEGTTHLQSGIAGDITTPQTCTN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2392g00035 648 Pfam mTERF 241 374 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 Pfam mTERF 340 607 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 Coils Coil 155 175 - -
Gabi2392g00035 648 MobiDBLite consensus disorder prediction 60 87 - -
Gabi2392g00035 648 SMART mt_12 313 343 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 493 524 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 348 379 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 561 592 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 529 559 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 456 488 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Gabi2392g00035 648 Gene3D Transcription termination factor 3, mitochondrial 385 621 IPR038538 -
Gabi2392g00035 648 MobiDBLite consensus disorder prediction 110 130 - -
Gabi2392g00035 648 FunFam BnaA09g42960D protein 386 617 - -
Gabi2392g00035 648 PANTHER CGI-12 PROTEIN-RELATED 286 387 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2392g00035 Gabi-Chr2392 252418 256204 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi2392g00035 mTERF 2.1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2392g00035 K15031 - qsa:O6P43_001902 893.649