Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2392g00023 ATGGCGGATTCCGGCAGCGCCACAACCTCACTTGCGGGTTTGAAGCTTCTCGTTTTAGTTGGCATTTTCATTTTCATCGTTGTTGTAATTGTGGTCCTGATCTTCCTCTGCTTTCGCGGAAGCCGAAGCTGGAAGAAGCACAAGATGCTAGTGAAGAAGCACAGCTCCGGAACAATCCCTTTGGTCTCCAAGGAGATCGTGGTGGTTAAATCCTTGGATCTCAACCATGCCTCTGAACAAACGCAGATTGAGATTGAAGATGTTGACGTTGATCCGAAGAAGGAGGCGGAGATCAAGGTCGAAATTGGAAAGATTAGGAAGAGTGACATGTCTGGTGGGGTTCACTGCAATGATTTATCTGTGGAGGATCCGAACATAGGTTGGGGTCGCTGGTATAGTCTGAAGGAAGTGGAGGTTGCAACGCGTGGATTTGATCAAGGGAATGTGATTGGGGAAGGAGGGTATGGTGTTGTGTACAGAGGAGTTTTGCAAGATGGTTCTGTGGTTGCTGTTAAGAATCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTCGAAGCCATTGGAAAAGTAAGGCATAAGAATTTGGTTGGTTTAGTAGGATATTGTGCGGAAGGTGCTCGAAGGATGCTTGTTTATGAATATGTTGACAACGGAAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATGTTCGGATGAGAATTGCCATTGCGACTGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCTAGTAACATTCTTTTAGACAAAAACTGGAATGCCAAAGTGTCAGATTTTGGACTTGCCAAGCTCCTGGGATCTGAGATAACCCATGTGACTACGCGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTATGCAAGCACCGGAATGCTTAACGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATTACAGGAAGAAGCCCCATTGATTATTCAAGACCACCCGGAGAGATGAATTTGGTTGATTGGTTTAAGGGAATGGTAGGAAGTCGTCGCAGTGATGAGCTAGTTGATCCTTTAATTGAGATTCAACCCTCTCCAAGATCTCTGAAGCGAGTTCTACTGGTTTGTCTGCGCTGTATAGATTTGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTGGAGACAGATGATTTCCCCTTTCGTTCTGAGTTACGTACAATTAGAGACAAAGATCCTGTGCCTTCTCATGCAGATGTTTCCGGTAGAGTTCCATATTTACAAAAGCATGCAGAACCCATAGAAAAATCAAGACGGAGATGA 1386 0.4488 MADSGSATTSLAGLKLLVLVGIFIFIVVVIVVLIFLCFRGSRSWKKHKMLVKKHSSGTIPLVSKEIVVVKSLDLNHASEQTQIEIEDVDVDPKKEAEIKVEIGKIRKSDMSGGVHCNDLSVEDPNIGWGRWYSLKEVEVATRGFDQGNVIGEGGYGVVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDVRMRIAIATAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEITHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVGSRRSDELVDPLIEIQPSPRSLKRVLLVCLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTIRDKDPVPSHADVSGRVPYLQKHAEPIEKSRRR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2392g00023 461 SMART serkin_6 144 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2392g00023 461 Pfam Protein tyrosine and serine/threonine kinase 146 415 IPR001245 GO:0004672|GO:0006468
Gabi2392g00023 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Gabi2392g00023 461 PANTHER OS01G0323000 PROTEIN 4 431 - -
Gabi2392g00023 461 FunFam Probable serine/threonine-protein kinase At1g01540 124 219 - -
Gabi2392g00023 461 FunFam Putative receptor-like serine/threonine-protein kinase 220 430 - -
Gabi2392g00023 461 MobiDBLite consensus disorder prediction 433 461 - -
Gabi2392g00023 461 ProSiteProfiles Protein kinase domain profile. 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2392g00023 461 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Gabi2392g00023 461 CDD STKc_IRAK 150 416 - -
Gabi2392g00023 461 SUPERFAMILY Protein kinase-like (PK-like) 123 417 IPR011009 -
Gabi2392g00023 461 Gene3D Phosphorylase Kinase; domain 1 121 219 - -
Gabi2392g00023 461 Gene3D Transferase(Phosphotransferase) domain 1 220 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2392g00023 Gabi-Chr2392 215233 218290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2392g00023 86 435 Receptor kinase-like Gene Family AT4G02010 43.503 2.58e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi2392g00023 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2392g00023 - - tpra:123913149 686.026