Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2391g00033 ATGATTTTAGCCGTTGCTGCTGCAGCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGGTCCGGCATACCTGAGGTGAAGGCATACCTCAATGGTGTAGACGCTCCTTCTATATTAGCTCCAACTACCCTCTTTGTAAAGATTTTTGGTTCAATATTTGGGGTTGCGGCTGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTACACACTGGTTCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTAGAAAATATCGGTTGACATGGAGATGGCTCAGACATTTTAAAAATGACCGAGACCGAAGGGATTTGATCACGTGTGGTGCAGCTGCTGGTGTTGCTGGTGCTTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCCTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTTACGACAGCTGTGGTAGCTGTAGTGCTGAGAGGTTTCGTAGAATTATGCCGGGGTGGAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGAGGTTAATTCAGCAAAGCCTGCTTACACCACACCTGACCTCCTCGCAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTAGGAAGCCTTTACAATTATCTTGTGGACAAGGTCCTTCGCACTTACGCCATCATAAATGAGAAAGGCCCTATATTCAAAGTTCTACTTGTCATGATTATCTCCTTTTTGACCTCTTGCTGTTCATTTGGCCTTCCATGGCTATCAAAGTGCATCCCTTGTCCTCCTCATTTGAGGGATCAGTGCCCAACCGTAGGGCGCTCCGGACACTACAAGAATTTTCAGTGCCCACCTAACCACTACAACGACCTTGCCTCTCTCTTTTTTACTACTAATGATGATGCTATTCGTAACTTATTTATTGCTGGCTCTGACAAAAGATTTCTGCTCTCTAGTCTTCTGATTTTCTTTGTGGCCATATACTTTCTTGGAATCATCACTTATGGCATTGCCATTCCCTCTGGGCTCTTTATTCCTGTTATACTTGCTGGAGCTTCGTATGGGCGTCTTGTAGGAAGTCTCTTGAGTCCATTCACTGTTCTTGATGTGGGTTTGTTTGCCCTCCTTGGGGCTGCATCCTTCCTTGGAGGCACCATGAGAATGACCGTTTCTCTTTGTGTCATACTTCTTGAACTCACAAATAACCTGCTGATGCTTCCATTGGTGATGTTGGTTCTCCTTATTTCCAAGTCTGTGGCTGATTGTTTTAACAAAGGAGTTTATGATCAGATTGTGCAAATGAAGGGGCTACCTTATATGGAAGCACATGCAGAACCATACATGAGGCAATTAATTGCAAGTGATGTTGTTTCTGGTCCATTGGTTACATTTGCTGGGGTTGAAAAAGTGGGGAACATTGTGCATGCTTTAAAGGTCACTGGACATAATGGGTTTCCTGTAATTGATGAGCCTCCTTTCTCAGATGCTCCTGAATTGTGTGGGTTGGTTTTGAGGTCTCATCTGCTTGTACTCCTTAAACACAGGACATTTACAAAGGAGAGAGGGATGACTGGATCCTCCATTATGAGAAACTTCAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAGGGGATCAAGCTGGAGGATATAGACATTTCTGAGAACGAGATGGAAATGTATGTTGATCTCCATCCGATTACTAATACGTCACCATATACAGTTGTGGAAACAATGTCTCTAGCTAAAGCTGCTCTTCTTTTCCGGGAGCTTGGCCTCAGGCACTTGTTGGTGGTGCCAAAGACACCGGGAAGACCTCCAATTGTCGGGCTCCTGACAAGACATGATTTCATGCCTGAGCATGTCTTGGGACTTTACCCTCACTTCCACTCCCATAAGTAG 1893 0.4506 MILAVAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILAPTTLFVKIFGSIFGVAAGFVVGKEGPMVHTGSCIANLLGQGGSRKYRLTWRWLRHFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFVELCRGGKCGLFGEGGLIMFEVNSAKPAYTTPDLLAVIFLGVIGGLLGSLYNYLVDKVLRTYAIINEKGPIFKVLLVMIISFLTSCCSFGLPWLSKCIPCPPHLRDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRLVGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVQMKGLPYMEAHAEPYMRQLIASDVVSGPLVTFAGVEKVGNIVHALKVTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTKERGMTGSSIMRNFKAHDFAKPGSGKGIKLEDIDISENEMEMYVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKTPGRPPIVGLLTRHDFMPEHVLGLYPHFHSHK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2391g00033 630 Gene3D Clc chloride channel 1 437 - -
Gabi2391g00033 630 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 620 - -
Gabi2391g00033 630 Pfam Voltage gated chloride channel 4 418 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 Gene3D - 438 616 IPR046342 -
Gabi2391g00033 630 Pfam CBS domain 566 614 IPR000644 -
Gabi2391g00033 630 SMART cbs_1 457 510 IPR000644 -
Gabi2391g00033 630 SMART cbs_1 568 619 IPR000644 -
Gabi2391g00033 630 SUPERFAMILY CBS-domain pair 441 615 IPR046342 -
Gabi2391g00033 630 CDD CBS_pair_voltage-gated_CLC_euk_bac 449 617 - -
Gabi2391g00033 630 ProSiteProfiles CBS domain profile. 564 628 IPR000644 -
Gabi2391g00033 630 PRINTS Plant CLC chloride channel signature 132 140 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2391g00033 630 PRINTS Plant CLC chloride channel signature 164 171 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2391g00033 630 PRINTS Plant CLC chloride channel signature 146 156 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2391g00033 630 PRINTS Plant CLC chloride channel signature 288 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi2391g00033 630 SUPERFAMILY Clc chloride channel 2 439 IPR014743 -
Gabi2391g00033 630 PRINTS Chloride channel signature 47 66 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 424 438 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 386 405 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 111 130 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 336 356 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 16 33 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi2391g00033 630 PRINTS Chloride channel signature 368 384 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2391g00033 Gabi-Chr2391 247168 254560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2391g00033 1 630 Ion Channels AT5G49890 79.873 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2391g00033 K05016 - jre:108988922 1011.91