Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2386g00004 ATGATTTGCTGTCCTGAAATTTCAATTTTTTTTGTAGATATTAATTATATGAAGTGTCAGGCATTTTCAAACAATCTAACAATGGCAATTTCATCTTTTGCACAGGAACAAAAGCAACCGAGAAAATGCAAAAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCTACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAATTGCAAGAAAGCAAGGGTGCATCCAAGAAAATGCAAGAAAAGGCCGAGGGATTCATCAGATGATGACGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAAATGCAAGAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTCAGGGATTCATCAGATGATGACGATGATGATGATGAGTGGACTCCGGCAAAGACCCTCCAACCTTATGCAGTGCCGGTACAGGTGCATCCAAGAAAGTGCAAGAAAAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGAGTGGGCTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAAAGCAAGGGTGCATCCTAGAAAATGCAAGAAAAGAAAGCAAGTGTCAGATGATGAATACTCTCAACCCATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAAGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAACATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 2157 0.4182 MICCPEISIFFVDINYMKCQAFSNNLTMAISSFAQEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRNCKKARVHPRKCKKRPRDSSDDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDEWTPAKTLQPYAVPVQVHPRKCKKRLRDSSDDDDDDDEWAPTKTLQPYAVPEQKQPRKCKKARVHPRKCKKRKQVSDDEYSQPMSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2386g00004 718 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 550 707 IPR000182 GO:0016747
Gabi2386g00004 718 SMART PHD_3 425 466 IPR001965 -
Gabi2386g00004 718 SUPERFAMILY FYVE/PHD zinc finger 414 475 IPR011011 -
Gabi2386g00004 718 ProSiteProfiles Zinc finger PHD-type profile. 423 468 IPR019787 -
Gabi2386g00004 718 Pfam PHD-finger 425 467 IPR019787 -
Gabi2386g00004 718 Pfam Tify domain binding domain 356 400 IPR032308 -
Gabi2386g00004 718 CDD NAT_SF 608 668 - -
Gabi2386g00004 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 488 IPR013083 -
Gabi2386g00004 718 MobiDBLite consensus disorder prediction 36 289 - -
Gabi2386g00004 718 Pfam Acetyltransferase (GNAT) family 595 684 IPR000182 GO:0016747
Gabi2386g00004 718 Gene3D - 547 714 - -
Gabi2386g00004 718 PANTHER PHD FINGER PROTEIN 12 171 716 IPR042163 GO:0003714|GO:0045892
Gabi2386g00004 718 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 592 685 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2386g00004 Gabi-Chr2386 8519 12570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2386g00004 297 661 PHD Transcription Factor Family AT5G58610 43.229 1.10e-90 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2386g00004 Acetyltransf_1 3.6e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2386g00004 - - aprc:113866262 528.094