Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2386g00003 ATGATTTGCTGTCCTGAAATTTCAATTTTTTTTGTAGATATTAATTATATGAAGTGTCAGGCATTTTCAAACAATCTAACAATGGCAATTTCATCTTTTGCACAGGAACAAAAGCAACCGAGAAAATGCAAAAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCTACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAATTGCAAGAAAGCAAGGGTGCATCCAAGAAAATGCAAGAAAAGGCCGAGGGATTCATCAGATGATGACGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAAATGCAAGAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTCAGGGATTCATCAGATGATGACGATGATGATGATGAGTGGACTCCGGCAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAATTGCAAGAAAGCAAGGGTGCATCCAAGAAAGTGCAAGAAAAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGAGTGGGCTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAAAGCAAGGGTGCATCCTAGAAAATGCAAGAAAAGAAAGCAAGTGTCAGATGATGAATACTCTCAACCCATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAAGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAACATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 2187 0.4179 MICCPEISIFFVDINYMKCQAFSNNLTMAISSFAQEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRNCKKARVHPRKCKKRPRDSSDDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDEWTPAKTLQPYAVPEQKQPRNCKKARVHPRKCKKRLRDSSDDDDDDDEWAPTKTLQPYAVPEQKQPRKCKKARVHPRKCKKRKQVSDDEYSQPMSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2386g00003 728 Gene3D - 557 724 - -
Gabi2386g00003 728 SUPERFAMILY FYVE/PHD zinc finger 424 485 IPR011011 -
Gabi2386g00003 728 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 560 717 IPR000182 GO:0016747
Gabi2386g00003 728 Pfam PHD-finger 435 477 IPR019787 -
Gabi2386g00003 728 Pfam Acetyltransferase (GNAT) family 605 694 IPR000182 GO:0016747
Gabi2386g00003 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 498 IPR013083 -
Gabi2386g00003 728 SMART PHD_3 435 476 IPR001965 -
Gabi2386g00003 728 ProSiteProfiles Zinc finger PHD-type profile. 433 478 IPR019787 -
Gabi2386g00003 728 MobiDBLite consensus disorder prediction 37 299 - -
Gabi2386g00003 728 PANTHER PHD FINGER PROTEIN 12 167 726 IPR042163 GO:0003714|GO:0045892
Gabi2386g00003 728 Pfam Tify domain binding domain 366 410 IPR032308 -
Gabi2386g00003 728 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 602 695 IPR016181 -
Gabi2386g00003 728 CDD NAT_SF 618 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2386g00003 Gabi-Chr2386 8519 12570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2386g00003 307 671 PHD Transcription Factor Family AT5G58610 43.229 2.22e-90 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2386g00003 Acetyltransf_1 3.7e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2386g00003 - - aprc:113866262 528.094