Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2386g00002 ATGATTTGCTGTCCTGAAATTTCAATTTTTTTTGTAGATATTAATTATATGAAGTGTCAGGCATTTTCAAACAATCTAACAATGGCAATTTCATCTTTTGCACAGGAACAAAAGCAACCGAGAAAATGCAAAAAAGCAAGGGTGCATCCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCTACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCGAGAAATTGCAAGAAAGCAAGGGTGCATCCAAGAAAATGCAAGAAAAGGCCGAGGGATTCATCAGATGATGACGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAATAGGCTGAGGGATTCATCAGATGATGACGATGATGATGATGATGAGTGGACTCCGACAAAGACCCTCCAACCTTATGCAGTGCCGGAACAAAAGCAACCAAGAAAATGCAAGAAAGCAAGGGTGCATCCTAGAAAATGCAAGAAAAGAAAGCAAGTGTCAGATGATGAATACTCTCAACCCATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAAGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAACATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 1905 0.41 MICCPEISIFFVDINYMKCQAFSNNLTMAISSFAQEQKQPRKCKKARVHPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRNCKKARVHPRKCKKRPRDSSDDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKNRLRDSSDDDDDDDDEWTPTKTLQPYAVPEQKQPRKCKKARVHPRKCKKRKQVSDDEYSQPMSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2386g00002 634 CDD NAT_SF 524 584 - -
Gabi2386g00002 634 MobiDBLite consensus disorder prediction 37 205 - -
Gabi2386g00002 634 Pfam Tify domain binding domain 272 316 IPR032308 -
Gabi2386g00002 634 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 508 601 IPR016181 -
Gabi2386g00002 634 Gene3D - 463 630 - -
Gabi2386g00002 634 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 466 623 IPR000182 GO:0016747
Gabi2386g00002 634 Pfam Acetyltransferase (GNAT) family 511 600 IPR000182 GO:0016747
Gabi2386g00002 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 404 IPR013083 -
Gabi2386g00002 634 ProSiteProfiles Zinc finger PHD-type profile. 339 384 IPR019787 -
Gabi2386g00002 634 Pfam PHD-finger 341 383 IPR019787 -
Gabi2386g00002 634 SMART PHD_3 341 382 IPR001965 -
Gabi2386g00002 634 SUPERFAMILY FYVE/PHD zinc finger 330 391 IPR011011 -
Gabi2386g00002 634 PANTHER PHD FINGER PROTEIN 12 106 632 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2386g00002 Gabi-Chr2386 8519 12570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2386g00002 213 577 PHD Transcription Factor Family AT5G58610 43.229 1.61e-91 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2386g00002 Acetyltransf_1 3e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2386g00002 - - aprc:113866262 528.094