Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2386g00001 ATGAGTTTCGTAGGTGGTAAAAGAGCTGGTAAGGTCCTGCGATCGAGCGAAAGGGTAAGGAATGGGGATGAGGCACAAAGTTCTGGGAATCAACGAACAATCATCTCTTGGCTGATAGACAACAATGTGGTGCATTCAGAATCCAAGGTATTCTGTTACAGTAGAAATAATGTGGTGAAAAATGGGAGGCTATTGCATTGTGGAAGAATAGCTTGTGATTGTTGTGGTTCGGTTTTCTCCATCGCTAAATTTGAGGCTCATGCTGATTGTACAAAGCACAGACCATCTGCCAGTATCTTCTTGGAAGATGGAAGGTCACTGTTAGATTGCAAAAGAGAAGCACTGAGTTCGCAACAAAAAAAGAATGATGTTCTGATGCAGAGCGAAAGTGGTTATGAAGACAGGAACAACAACATTTGTTCCATTTGTAGTTATGGGGGTAATCTAATGCTATGTGACCGATGTCCATCCTCATTCCACCTTAGTTGTCTTGGTCTTGAGAAAGTTCCTGATGGTGATTGGTTCTGCCCCCCATGCTGCTGCAAAATCTGCAACCGACCTTCATGTAGAGAAGATTGTGCAGATAATTATCCGGATAACTGTTTTCTCTTCTGTTATCAATGCGAGAGCAAATTTCACCTTGGATGCGCAAATAATAATAGCTTTTGCAGTGTTGATTGTGGGGATATATTTTCCAGTCTACAGAAAATGATAGGAAAACCAATTCCAGTGGGTGAGGATAACCTAACTTGGACATTGTTGAAGACCGTGAAAAGTGATAACTGTTGCGAAGATCTTGAGAGCTTAAGTCAAATTGAAAGCAAGCTGAGTATGGCTCTTAGTGTATTCCACGAGTGTTTTGATCCAATTATTGATGCTCTCACCGGAAGAAATATTATATCAGATGTTATTTTTAGTAGAAGTTCAGAACATAAGCGTTTGAACTTTCGTGGGTTCTACACTGTGATTATGGAGAGTAATGATCATGTGGTTTCTGCTGCAACCATAAGGATTTATGGTCAAAAGGTTGCAGAGATACCTTTTGTGGCCACTAGGAAGCAGTTTCGAAGACAAGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAATTGTGTCACTTAGGAATTGAGAGGATGGTTTTGCCTTCCACTGATAGTGCGATAGAGACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCTGACAAGTCTCAATTGCTTGATTATGCTTTTCTAGACTTCCATGACACCACTATGTGCCACAAACCATTGATGAAAACTTCAATGTAA 1299 0.4065 MSFVGGKRAGKVLRSSERVRNGDEAQSSGNQRTIISWLIDNNVVHSESKVFCYSRNNVVKNGRLLHCGRIACDCCGSVFSIAKFEAHADCTKHRPSASIFLEDGRSLLDCKREALSSQQKKNDVLMQSESGYEDRNNNICSICSYGGNLMLCDRCPSSFHLSCLGLEKVPDGDWFCPPCCCKICNRPSCREDCADNYPDNCFLFCYQCESKFHLGCANNNSFCSVDCGDIFSSLQKMIGKPIPVGEDNLTWTLLKTVKSDNCCEDLESLSQIESKLSMALSVFHECFDPIIDALTGRNIISDVIFSRSSEHKRLNFRGFYTVIMESNDHVVSAATIRIYGQKVAEIPFVATRKQFRRQGMCSILMNELEKQLCHLGIERMVLPSTDSAIETWTNSFGFARMTDSDKSQLLDYAFLDFHDTTMCHKPLMKTSM 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2386g00001 432 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 264 421 IPR000182 GO:0016747
Gabi2386g00001 432 CDD NAT_SF 322 382 - -
Gabi2386g00001 432 PANTHER PHD FINGER PROTEIN 12 15 430 IPR042163 GO:0003714|GO:0045892
Gabi2386g00001 432 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 306 399 IPR016181 -
Gabi2386g00001 432 Gene3D - 259 429 - -
Gabi2386g00001 432 ProSiteProfiles Zinc finger PHD-type profile. 137 182 IPR019787 -
Gabi2386g00001 432 Pfam Tify domain binding domain 70 114 IPR032308 -
Gabi2386g00001 432 Pfam Acetyltransferase (GNAT) family 308 398 IPR000182 GO:0016747
Gabi2386g00001 432 Pfam PHD-finger 139 181 IPR019787 -
Gabi2386g00001 432 SUPERFAMILY FYVE/PHD zinc finger 128 189 IPR011011 -
Gabi2386g00001 432 SMART PHD_3 139 180 IPR001965 -
Gabi2386g00001 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2386g00001 Gabi-Chr2386 8519 12882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2386g00001 4 370 PHD Transcription Factor Family AT5G58610 43.005 4.71e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2386g00001 Acetyltransf_1 1.6e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2386g00001 - - aprc:113866262 517.309