Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2383g00003 ATGGCCGATCTTGTTGTTCGCCTCTTGCTGCAGAACTTGCCACAGCTTCTTGAGGATGAATTTAAGTTACTTTCTGGGGTAGAAGACAAAATCAATTCCCTTACCAATGAGCTTAAGTTTATTGACTTATTTCTCAAGAGCTCTGAGGGGAAGCGCAACGACGATTGTGTGAAAACTATTGAGAAGATCAAGAGCTATATTGTTCAAATTTATACGAATAAGGAGAGATACGGCATTGGAGAAGGAGAATTTAAAAGTGAAGAAGAAGGAGAAGAACAACAAGTTACAGAATCACTCCGTAAAAGGAGGAAGGATGTGGAGGAAGAGCATGTGGTGGGATTAGTTCAAGACAGCAATGTTGTAATTACACAGCTCATGGAAACGGATTCGCGTCTTAATGTTGTTCCCATAATTGGTATGGGTGGGTTGGGCAAGACCACACTTGCAAGAAAGATCTACAACAACAATAAGGTGAAGGAGTTGTTTCGTTGCCGCGCTTGGGGTGACGTGTCTAATGATTACAGACCCATGGAGCTCTTGCTTAGCCTTTTCAAGTGTTTCCAATCGTCTTCATCGGAATATAATAATTTAAATGAAGAGGAATTGAAGATGATGGTGAGAGAATGCTTGAAGGGAAAGAGGTATCTAATAGTGCTTGATGACATTTGGAAAACTCAAGTTTGGGATGACATAAAAGGTGTCTTTCCAGATGACAAAAACCGTAGCAGAATACTGATAACTAGTCGTATAAAGGAGGTGACTTCTTATTGTGGAACAACCCCTCCCTATAACCTTCCATTGCTCAATAAAGAACAAAGTTGGGAACTCTTTTCCAAGAAGGTGTTTCAAGGTGAAGAGTGTCCTTCTGATCTAGAGCATCTGGGTAGGTCAATTGCTGAAAGTTGTGGGGGTTTGCCACTTGGCATAGTCGTCTTAGCAGGATTGGTTCGAAAGAAAGAGAGATCAGAAAGAGAGTGGTCGAGATTGAAGAAAATCAGTTGGCATCTAACTCAAGATAAGACTGAAGTGATGGATATATTAAAGCTTAGCTATGACAACTTGCCTCGAAGATTAAAGCCATGCTTTCTGTATTTTGCAATCTACCCTGAAGACTATGAGATCCGTGCAAACAAATTGATGGAATTATGGATAGCCGAAGGATTCATACAACCAAAAGAAATTGGATACCCAAATCCACCACAAGTAGAAGACATTGCTGAATACTACTTGGATGAGCTGGTGGATCGTAGCTTGGTGAAAGTGGTAAGGAGGAGGATTGATGGAGGTGTAAAAACATGTCAGATTCATGATCTTCTCCGTGACCTCTGCATATCCGAGAGCAAATCCAATGGGTTATTGGAGGTTTCCACAGGGGCGAACATGGATACACTGAGCAGTCCCCATAGATTGTCCTTGCACGGGAGAGCACAATCTTATCTCTCTTTTGACAAATTTAATCAATCATCCACTCGTTCCTTGTTCTTCTTTACTACAGGGAAATTCCCTCATTCTGGTCATGATCATGTTATGAAGAACTTCAAGTTGGCTCGCGTGCTATATGCCGAAGCATCGTTGTTTTCTTCACTAAGCATTGGTTTGAAGATGATGATCCATCTGAGATACTTGAAAGTAGATACAGATGTAAGAGATATTCCAGCTTCTATATGCAGCCTTCGGAATCTAGAAATGCTACATTTGACACTACCACTTATCCGGGGAAGATGGAGTCGTCTTCCTATGGGAATGGGAAGGTGTAGAGAGCTGTCAAGCCTAACCAATCTCCGTTCCATAAAATTAATCGGCTTTGAACATCTTCCATTGGAGTTTCCATCAAATATTGTGAAGATAACATTGCAATCTACAGTTATAGACGGCAACAAGGATATCATGAAGACTCTAGGACGGCTTGCCAACCTCCAAATTCTGAAACTAAAATATTTTGTTGGTCTTTCTGACATTATTATTGCCGCTGGAGAGTTCCCACGGCTTCGATGGGTGCTCCTTCTTGGATGA 2013 0.4133 MADLVVRLLLQNLPQLLEDEFKLLSGVEDKINSLTNELKFIDLFLKSSEGKRNDDCVKTIEKIKSYIVQIYTNKERYGIGEGEFKSEEEGEEQQVTESLRKRRKDVEEEHVVGLVQDSNVVITQLMETDSRLNVVPIIGMGGLGKTTLARKIYNNNKVKELFRCRAWGDVSNDYRPMELLLSLFKCFQSSSSEYNNLNEEELKMMVRECLKGKRYLIVLDDIWKTQVWDDIKGVFPDDKNRSRILITSRIKEVTSYCGTTPPYNLPLLNKEQSWELFSKKVFQGEECPSDLEHLGRSIAESCGGLPLGIVVLAGLVRKKERSEREWSRLKKISWHLTQDKTEVMDILKLSYDNLPRRLKPCFLYFAIYPEDYEIRANKLMELWIAEGFIQPKEIGYPNPPQVEDIAEYYLDELVDRSLVKVVRRRIDGGVKTCQIHDLLRDLCISESKSNGLLEVSTGANMDTLSSPHRLSLHGRAQSYLSFDKFNQSSTRSLFFFTTGKFPHSGHDHVMKNFKLARVLYAEASLFSSLSIGLKMMIHLRYLKVDTDVRDIPASICSLRNLEMLHLTLPLIRGRWSRLPMGMGRCRELSSLTNLRSIKLIGFEHLPLEFPSNIVKITLQSTVIDGNKDIMKTLGRLANLQILKLKYFVGLSDIIIAAGEFPRLRWVLLLG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2383g00003 670 Gene3D Ribonuclease Inhibitor 491 670 IPR032675 -
Gabi2383g00003 670 Gene3D - 267 355 IPR042197 -
Gabi2383g00003 670 Pfam Rx N-terminal domain 5 55 IPR041118 -
Gabi2383g00003 670 SUPERFAMILY L domain-like 427 664 - -
Gabi2383g00003 670 PANTHER DISEASE RESISTANCE PROTEIN RP 53 644 IPR044974 GO:0006952
Gabi2383g00003 670 Pfam NB-ARC domain 119 353 IPR002182 GO:0043531
Gabi2383g00003 670 Gene3D - 5 70 - -
Gabi2383g00003 670 PRINTS Disease resistance protein signature 589 605 - -
Gabi2383g00003 670 PRINTS Disease resistance protein signature 134 149 - -
Gabi2383g00003 670 PRINTS Disease resistance protein signature 209 223 - -
Gabi2383g00003 670 PRINTS Disease resistance protein signature 302 316 - -
Gabi2383g00003 670 FunFam Probable disease resistance protein At1g63360 351 445 - -
Gabi2383g00003 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 365 IPR027417 -
Gabi2383g00003 670 Gene3D - 356 445 IPR036388 -
Gabi2383g00003 670 Gene3D - 89 261 IPR027417 -
Gabi2383g00003 670 FunFam Probable disease resistance protein At1g61300 93 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2383g00003 Gabi-Chr2383 60523 62772 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2383g00003 121 442 WRKY Transcription Factor Family AT5G45050 25.364 3.89e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2383g00003 - - gmx:100801950 665.225