Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2383g00001 ATGAAGGAGAAAGTCAGTGTTGGGACATTAGTGGAGATGCAGTTGATACCTTTAATGATGTTGGAAGCTTTAGATGGTGCTACCATTTCCTTAGATGAGCCAGAGATGGAAAACTTGCCACGACTCCTTGAGGATGAATTTAAGTTACTTTCTGGTGTAGAAGACAAAATCATTTCCCTTACGAAAGAGCTTGAGTTTTTTGACTTTTTCCTCAAGAGCTCCGAGGGGAAGCGCAACAACGATTTTGTGAAAGAATTGGTGAGCCAAATAACTGATGTTGCCTATCAAGTTGAGGATGTGGTAGACACCTACATTGCCAATGTTACCCAACACAGAAGCATAGACATGTTTGAAAAGTCAGTCACCTTACCACCACATGTTATGGAGCTTCACAATGTTGATCATAAGATAGGGAAGATCAAGAACTGTATTGATGAAATTTATAAGAACAAGGAGAGATATGGCATCGGAGAAGGCGAATTTAAAAGTGAAGAAGAAGAACAAGTTTCCATAATTGGTATAGGTGGGTTGGGCAAGACCACACTTGCAAGAAAGATCTACAACAACTCTCAGGTGAAGGAGTTGTTTCCTTGCCGTGCTTGGGGTTATGCGTCTAACTATTACAGACCCATGGAGCTCTTGCTAAGCCTTCTCAAGTGTTTTCAATTGTCCGCATCTGAATATAATAATTTAAAAGAAGATGAACTGAAGATGAGAGAATGCTTGAAGGGAAAGAAGTATCTAATAGTGCTTGACGACATTTGGAAAACTCAAGTTTGGGACGAGGTAAAAGCTGTCTTTCCTGATGATAAAAACGGTAGCAGAATACTGATAACAAGTCGTATAAAAGAGGTGGCTTCTTATTGTGGAAACCCTTCCTATTACCTTTCATTTCTCAATAAAGAAGAAAGTTGGGAACTATTTTCCAATAAGGTGTTTGAAGGTGAAGAGTGTCCTTCTGATCTAGTGCCTCTGGGAAGGTCGATTGCTGAAAGTTGTGGGGGTTTGCCACTTGGTATAGTCGTCTTAGCAGGATTTGTTAGAGAGAAAGAGAAATCAGAGAGAGAGTGGTCGAGATTGAAGGAAGTCAGTTGGCATATCACTCAAGACAAGACTGAAGTGATGGATATACTGAAGCTTAGTTATGACATCTTGCCTCGAAGATTAAAGCCATGTTTTTTGTATTTTGCAATCTATCCTAAAGACTATGAGATCGATGCGAGCGAATTGATGGAATTATGGATTGCCGAAGGATTCATACAACCAAAAGAGAGTGGATGA 1281 0.3997 MKEKVSVGTLVEMQLIPLMMLEALDGATISLDEPEMENLPRLLEDEFKLLSGVEDKIISLTKELEFFDFFLKSSEGKRNNDFVKELVSQITDVAYQVEDVVDTYIANVTQHRSIDMFEKSVTLPPHVMELHNVDHKIGKIKNCIDEIYKNKERYGIGEGEFKSEEEEQVSIIGIGGLGKTTLARKIYNNSQVKELFPCRAWGYASNYYRPMELLLSLLKCFQLSASEYNNLKEDELKMRECLKGKKYLIVLDDIWKTQVWDEVKAVFPDDKNGSRILITSRIKEVASYCGTXPSYYLSFLNKEESWELFSNKVFEGEECPSDLVPLGRSIAESCGGLPLGIVVLAGFVREKEKSEREWSRLKEVSWHITQDKTEVMDILKLSYDILPRRLKPCFLYFAIYPKDYEIDASELMELWIAEGFIQPKESG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2383g00001 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 397 IPR027417 -
Gabi2383g00001 427 Pfam Rx N-terminal domain 37 113 IPR041118 -
Gabi2383g00001 427 Gene3D - 117 293 IPR027417 -
Gabi2383g00001 427 Pfam NB-ARC domain 165 384 IPR002182 GO:0043531
Gabi2383g00001 427 Gene3D - 382 426 IPR036388 -
Gabi2383g00001 427 PANTHER DISEASE RESISTANCE PROTEIN RP 71 424 IPR044974 GO:0006952
Gabi2383g00001 427 FunFam Probable disease resistance protein At1g61300 158 293 - -
Gabi2383g00001 427 Gene3D - 299 381 IPR042197 -
Gabi2383g00001 427 PRINTS Disease resistance protein signature 241 255 - -
Gabi2383g00001 427 PRINTS Disease resistance protein signature 168 183 - -
Gabi2383g00001 427 PRINTS Disease resistance protein signature 334 348 - -
Gabi2383g00001 427 CDD RX-CC_like 36 147 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2383g00001 Gabi-Chr2383 16079 17748 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2383g00001 169 420 WRKY Transcription Factor Family AT5G45050 26.953 1.37e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2383g00001 - - gmx:100801950 515.768