Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2380g00016 ATGCTGGAAATCTCAACTTTACCAGAAGATCCTATCAACAACCCACAGGTAAGGGAGAGTGGTAGTACCGCCAGTGGTGAGCTAGTCTCCGATGGGTTCAAAGCGGAGCACGGCGAAGAGGGTGATCGGAATTCCACCGCGAACCGGTGGCCTCGAGAGGAAACAATGGCTCTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAGAGATATCACCCCCAAAGCACCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATAATAGAAGTGCAAAGAAGTGCAAGGAGAAGTTTGAGAACATTTACAAATACCATAGGAGAATCAAGGAAGGGCGTTGTGGCAGACCCAATAATGGCAAGACTTATCGTTTTTTCGAGCAATTGGAAGCTTTACAAGGCCACACACTTCCCCCTCCTCCTCAAACATCCTCTAAGGAACAATTAGTAGAGGTATTTGAAAGCACTAGAACCTCACCAACAACCCATGTACAAGAGCACTATTCAATTTCAACCACTTCCTCTTCCGGCAAATTTAAACGATTTTTCGAGGGGCTAATGAGGGAAGTGATAGAGAAGCAAGAAACGATGCAGAGGAATTTCATGGAGGTGTTGGAGAAGTGCGAGCAGGATCGAATGGCGAGGGAGGAAGCATGGAAGAATGAAGAGTTGGCTCGAATTAAGAGGGAGCGTGAGCTTCTTGCTCAAGAAAGGTCAATTGTTGCAGCGAAGAATGAAGCAGTGCTTGGCTTTCTTAAAAAGTTCAGAGTGCACTTTCCTGAGAAAATTATCGAGGTTCCAAATAATGGCATGCAAGAAAATGCTAGTGGGAGTGGCAGCGATGAGTTAGAAAAGCAAGAATGTGGAAATGTTAGTGTTGGGAATTTTATACAAATGAGTTCCTCGCGATGGCCAAAGGAGGAAGTGGAGGCTTTGATAAGGTTGAGGACACAACTTGAATTGCAGCCACAAGGAAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCAATGAAAAGCCTTGGCTACGATCGCAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAGGATGAAAGAGAAGAACAAAAGAAAGCCTGAGGATTCCAAAACGTGTCCTTATTATCACCACCTTGAAGCTATATATAGTAGAAAGCCTAAGAAGGTGGATGATGCAGGATCAGCTGGTTCTGGCAATGAGTTAAAGCCCGAAGAGCTATTGATGCATATTGTAGGGAGTCATGAAGAGAGATCACAACAGCTAGAGTCATTATCCGAAGATGCTGATAGAGAGAACATGGAACAGAATCACCAGGGAGAAAATAATGAAGATCAAAGTGGGTATCAGATGGTTGCCAATAGTCCTTCCATAGCAATCATGGGTTAA 1419 0.444 MLEISTLPEDPINNPQVRESGSTASGELVSDGFKAEHGEEGDRNSTANRWPREETMALLKIRSEMDVAFRDITPKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHRRIKEGRCGRPNNGKTYRFFEQLEALQGHTLPPPPQTSSKEQLVEVFESTRTSPTTHVQEHYSISTTSSSGKFKRFFEGLMREVIEKQETMQRNFMEVLEKCEQDRMAREEAWKNEELARIKRERELLAQERSIVAAKNEAVLGFLKKFRVHFPEKIIEVPNNGMQENASGSGSDELEKQECGNVSVGNFIQMSSSRWPKEEVEALIRLRTQLELQPQGNGSKGPLWEEISLAMKSLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSRKPKKVDDAGSAGSGNELKPEELLMHIVGSHEERSQQLESLSEDADRENMEQNHQGENNEDQSGYQMVANSPSIAIMG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 32 50 - -
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 426 449 - -
Gabi2380g00016 472 CDD GT1 48 113 - -
Gabi2380g00016 472 Gene3D - 50 111 - -
Gabi2380g00016 472 Gene3D - 307 368 - -
Gabi2380g00016 472 CDD GT1 305 370 - -
Gabi2380g00016 472 FunFam Trihelix transcription factor GT-2 307 368 - -
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 9 27 - -
Gabi2380g00016 472 Pfam Myb/SANT-like DNA-binding domain 305 392 IPR044822 -
Gabi2380g00016 472 Pfam Myb/SANT-like DNA-binding domain 48 135 IPR044822 -
Gabi2380g00016 472 SMART sant 46 108 IPR001005 -
Gabi2380g00016 472 SMART sant 303 365 IPR001005 -
Gabi2380g00016 472 SUPERFAMILY Homeodomain-like 304 375 IPR009057 -
Gabi2380g00016 472 ProSiteProfiles Myb-like domain profile. 42 106 IPR001005 -
Gabi2380g00016 472 FunFam Trihelix transcription factor GT-2 50 111 - -
Gabi2380g00016 472 Coils Coil 425 445 - -
Gabi2380g00016 472 ProSiteProfiles Myb-like domain profile. 305 363 IPR001005 -
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 426 472 - -
Gabi2380g00016 472 PANTHER FI21293P1 23 454 - -
Gabi2380g00016 472 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2380g00016 Gabi-Chr2380 153198 155439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2380g00016 168 398 Trihelix Transcription Factor Family AT1G76890 47.541 2.82e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2380g00016 Myb_DNA-bind_4 9.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2380g00016 - - gmx:100805632 593.964