Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2380g00014 ATGACCTCTGCTCATGACCTTACTGATAATGAAGAGGATGGGCAGCAGCAGTCAAATTCACAAATGCAGACTTCATCTGCAAATGAAATTTCTGATCCAGGTGTTGTTACTCAGAATGTTCAGTATGCCACACCTGGCCAGCTTGGAACCGGGCATGCTATGGTACCACCTGTGTATCCATATCCCGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCACCAACCCTATAGTGGACAGCAAATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCCGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCATGGTATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGTTATAAGGAATCGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCACTGAAAAGAGCAAGAGGATGTGGTGGTAGGTTTCTGAATTCAAAGAAAAATGAGAACCAACATGATGATGTGGCATGGTCTGACAAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGATCTTACTTCGTCAGATAGGACATCCTAA 615 0.4211 MTSAHDLTDNEEDGQQQSNSQMQTSSANEISDPGVVTQNVQYATPGQLGTGHAMVPPVYPYPDPYYRSIFAPYDTQPYPHQPYSGQQMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALKRARGCGGRFLNSKKNENQHDDVAWSDKSQSNINLNSDKNDLTSSDRTS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2380g00014 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Gabi2380g00014 204 MobiDBLite consensus disorder prediction 13 29 - -
Gabi2380g00014 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 202 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 MobiDBLite consensus disorder prediction 163 204 - -
Gabi2380g00014 204 MobiDBLite consensus disorder prediction 1 29 - -
Gabi2380g00014 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Gabi2380g00014 204 Gene3D - 108 169 - -
Gabi2380g00014 204 MobiDBLite consensus disorder prediction 180 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2380g00014 Gabi-Chr2380 130922 137573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2380g00014 2 204 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.073 2.51e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2380g00014 CBFB_NFYA 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2380g00014 K08064 - gmx:100499754 358.992