Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2380g00006 ATGGGTAATTGCTGGTATAAATGGGAATCATCAGATTATAGAATATCATCCAATGCAAAGACAGAACAAAACCAGGAAATGAGACAAAGAAATGATGATAGAAACTTACCACGGAATCCTGAAGAAGTAGAAGACCTACGCCGTGATTCAGCTGCAAATCCATTGATTGCATTCACTTATGATGAGTTAAAGATAATCACTGGAAATTTTAGGCCAGATCGTGTCTTGGGGGGAGGAGGATTTGGAAGTGTTTATAAAGGGTTTATTTCTGAGGAGTTAAGGAAGGGGCTTCCTTCTCTTCCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAATTGGATACTGCTGCGAAGATGAACATAGGGTGCTAATATATGAGTATATGGCCCGTGGAAGTGTGGAAAACAATCTGTTCTCCAAAATTTTGCTTCCCATGCCATGGTCCATAAGAATGAAGATTGCACTTGGTGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGATAAACCTGTCATCTATCGTGATTTTAAGACATCAAATATTTTATTGGATCTGGACTATAATGCAAAACTTTCTGACTTTGGCCTCGCTAAAGATGGACCGGTTGGAGATAAATCTCATGTTTCTACTCGAATAATGGGAACATATGGGTATGCTGCACCTGAATACATAATGACTGGTCATCTTACCCCTAGAAGTGATGTTTACAGTTTTGGTGTTGTACTTCTTGAACTTATCACTGGAAGAAAATCTTTAGACAAGTTAAAACCTGCTAGAGAGCAGAACCTTACAGAATGGGCTCTTCCTTTGCTGAAGGAAAAGAAAAAAGTTCTAAATATTATAGATCCAAGGCTTGAAGGTGATTATCCAGTGAAAGGAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTAATGCGAGATGTTGTTGATTCATTGGAGCCTTTGCAGGCACACAATGAGGTCTCTATTGAAAAAACATTGACCATAATCAGTGAGGTTCCCCAAGATGATTTGAAAAGGAAAGATGCTGAATGA 1143 0.3972 MGNCWYKWESSDYRISSNAKTEQNQEMRQRNDDRNLPRNPEEVEDLRRDSAANPLIAFTYDELKIITGNFRPDRVLGGGGFGSVYKGFISEELRKGLPSLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVENNLFSKILLPMPWSIRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELITGRKSLDKLKPAREQNLTEWALPLLKEKKKVLNIIDPRLEGDYPVKGVHKAAMLAYHCLNRNPKARPLMRDVVDSLEPLQAHNEVSIEKTLTIISEVPQDDLKRKDAE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2380g00006 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Gabi2380g00006 380 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Gabi2380g00006 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Gabi2380g00006 380 Gene3D Phosphorylase Kinase; domain 1 33 153 - -
Gabi2380g00006 380 MobiDBLite consensus disorder prediction 17 45 - -
Gabi2380g00006 380 ProSiteProfiles Protein kinase domain profile. 70 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2380g00006 380 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Gabi2380g00006 380 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Gabi2380g00006 380 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Gabi2380g00006 380 PANTHER OS01G0588500 PROTEIN-RELATED 29 352 - -
Gabi2380g00006 380 FunFam Probable serine/threonine-protein kinase PBL8 154 367 - -
Gabi2380g00006 380 MobiDBLite consensus disorder prediction 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2380g00006 Gabi-Chr2380 53709 60486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2380g00006 3 364 Glycoside Hydrolase AT3G07070 44.730 1.43e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2380g00006 PK_Tyr_Ser-Thr 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2380g00006 - - gmx:100808795 689.878