Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi237g00003 ATGACCACCACCTCACTCTCTTTGATCTTCTTGCTCTTCTCTTTCCTCACCCCAACCCTCATTTCCTCTTCACCTGTTCAGAACCCTGAATTTGTGACACAAGAGGTAAACAGGAAAATCAATGCCACTGTAGCTAGGAGGAATTTGGGGTACCTCTCGTGTGGGAGTGGCAACCCCATTGATGATTGTTGGAGATGTGACTCCAATTGGGAGAATAATAGGCAAAGGCTAGCAGATTGTGCAATTGGTTTCGGAAAGAACGCCATTGGTGGAAGGGATGGTAAGATATATGTTGTCACCGACTCCGGCGACGATGATCCGGTGACCCCCAAACCGGGGACCCTCCGGTATGCGGTGATTCAAGACGAGCCATTGTGGATCATATTTGCAAGAGACATGGTGATTCAATTGAAGGAAGAACTCATCATGAACTCATTCAAGACCATTGATGGAAGAGGCGCGAGTGTGCATATTGCTGGTGGTCCATGCATTACTATTCAGTATGTTACCAATGTTATAATACATGGGATACATATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGGAGCTCCCCACGGCACTACGGGTGGAGAACCATATCGGATGGTGATGGTGTCTCCATCTTCGGAGGAAGTCACGTATGGGTGGACCATTGCTCCTTGTCTAACTGCGCTGATGGTTTGATCGATGCCATTGAAGGGTCCACAGCAATTACTATCTCCAACAATTACATGACACACCACGACAAGGCTATGCTGTTGGGTCATAGTGACTCATACACTCAAGACAAAAACATGCAGGTCACAATAGCTTTCAACCACTTTGGAGAAGGGCTTGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCCGATAACAGATTCAGCAAGGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAGGGGTGGAACTGGAGGTCAGAAGGAGACTTGCTGGTAAATGGTGCGTTTTTCACAGCATCAGGGGCAGGGGCCTCTTCTAGCTATGCAAGAGCTTCTAGCTTAAGTGCAAGGCCATCTTCACTTGTGGGTTCGATAACTACTGGTGCTGGTTCACTCAATTGTAGGAAGGGTTCTCGTTGCTGA 1221 0.4726 MTTTSLSLIFLLFSFLTPTLISSSPVQNPEFVTQEVNRKINATVARRNLGYLSCGSGNPIDDCWRCDSNWENNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCADGLIDAIEGSTAITISNNYMTHHDKAMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGSLNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi237g00003 406 Pfam Pectate lyase 140 323 IPR002022 -
Gabi237g00003 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Gabi237g00003 406 SUPERFAMILY Pectin lyase-like 39 400 IPR011050 -
Gabi237g00003 406 SMART amb_all 132 329 IPR002022 -
Gabi237g00003 406 Gene3D - 57 399 IPR012334 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Gabi237g00003 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Gabi237g00003 406 FunFam Pectate lyase 57 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi237g00003 Gabi-Chr237 66661 68638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi237g00003 1 406 Polysaccharide Lyase AT5G63180 79.218 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi237g00003 K01728 - gmx:100101868 742.651