Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi237g00002 ATGGATGGGCGGAGGCATTCTGTGGATATTCCTATTTCTAAAACTCTTGTAGCACTGAGGAGAGTCAGGTCATTGAGGGATCCATCAACTAATGGTATTAGCAAACTCTCTCCTTTGATTGATAATGGACATTGGGAAAATGGTTCGGGTAATGCCATTTCTCTGAGGTTCCTGAGTTCTTCTGATGCATGTGATGCTGAAGATGATGGATTTTTAAGATCAGATAATTTCAGTTTTAAGGGGAGAAGAGAGCAGGGTACTGCTGATTTTGAATTGGATTGTCGTCTGTTGAACTCTAAGATGAACTATGGTGAACTAGTTAACTCTATTCCCGAGCAGCAAGGCATTTCTGGAAATAAATCACCAAGTGAAAGCTGTTGTAGCAACCATGGGGAAATAGGACTAGATTTGGCTTCCATCTTGCCTCCTAGTAGTCATTTGAAGAATGGGGAATCATGCTATTTATCAAATGCCTTATCGAAATTAGGGAGAACAGATCACTCAAAGTCAACCAGAAATTCACTACGCAAGAATCAAGTGAAACCGTCTGAAGTAATGGATGATATTGCAAGCCATGTAAGGAGTCCATGCCTTTCTGTTCGTGATGCTTTCTCAGCACATGTGACTCAAGATGTTGATGTTCTAGATAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAGTCACCGAAGTTTAGAGAATCAAATCATTATTCTGAAGCAGAAGACCTTCCTTTGATATTGCAGCACGTTAATGAGACAGATTTTCATGGACATGGAAGCATGAGAAACATTGGTGGTGAAATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCCTTGAAATTCAGGCCAAAATCTTTCTGTGATTTGGTGGGACAAAACATGGTAGGAAGGTCTCTTTTGGGTGCCATCTCTAGAGGAAGGATAACATCATTTTATCTCTTCCATGGTCCCCGCGGTACAGGAAAAACCTCTGCGTCCAGGATATTTGCTGCTGCACTGAATTGCCTCACCCTTGAGGAGCAAAGGCCATGTGGTGTATGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTTTGAGAATCAATCGTGCAGACAAGGTTAAATCCCTTGTTAAGAATGCATGCCTCCCTCCAGCTTCCTCATGTTTTAAGGTGTACATTATTGATGAGTGCCAATTATTGCATGGTGAAACATGGGCGAGTCTTTTGAATAGCCTAGAGAATGTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATCTAGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGTGAAGATCAAAGATGCTGACATTGCAAGCAGATTAGAAAAAATTTGTGCTGAAGAAGGTCTTTATTTTGAACAATGTGCACTGAACTTTATTGCTGCTAAATCCTGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACAATTTCCGTAGTCCACGAGCTTACTGGGGTCGTTTCTGATGATGAATTACTTGATTTGCTGGACTTGGCTCTGTCATCTGACATATCAAATACAATTATAAGAGCCCGGGAGCTGTTGAGGTCAAGGATAGATCCTTTACAACTTATATCACAGCTGGCAAATCTTATTATGGACATTGTTGCAGGGAAATGTGAACTTGGTGGTTCTAAAATCAGAAAATTTTACCATTCTTCTCTTATCACAGCAGAAGCGGACCTGCAGAAATTAAGTCGTGCATTAAGAATACTTTCTGAGACAGAGAAGCAGTTGAGAATTTCGAAGAATCAAAATACATGGTTCACTGCAGCTCTTCTACAGTTAAGTTCAGTAGAACATTCATCTGTGGATATAAATGATACCAAGTTGTGTATGAAAGCTGCTTCCGATAAAGATGGTGATTTCTGCAGTACATCTTCTACAGAGAGCTTGAAGCATCTTGCTACATGTCAGAGTGATGACAAGTCCTATAGATTAGGAGTGCAAGAAGATCACAAGGGCACATTAGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAATAGGCTCAAAACTTTTCTTAGGAAGCATGGAAAGTTGTCTTCAATTTGTTTCAATCAAGGTCTTGCAGTTGCTGAGTTGGAGTTCCACCATCGTGACTATGTAGCTAGGGCTGAGAAATCATGGAAACTGATTGCAAGTAGCCTACAGTTCATATTGGGTTGTAACATTGAGCTCAGGATCAGTTATGTACCTCGTACATCGGATTCTAAGTATGCTAAATTGAAGAGGTCATCTTTTAATTTCTTTAGTTGTTCCCGCAGAATTCTACGGAAGTCCTTATCATCCACTAAACAAGGTAGTGAATCAGATTATACTGATTACACATCCCAAAAGCCCATCATGAAGGATCAAACTCTAACTTGTTACTCTGATTGTGGATCTCGGGTGCCACCACTTGAGTCCTACCATGGAATGGAGGTTGTAACAACTTTGAGAAGTTGTGAAGGGAATTTGTTAAGATCAGGGAAGAGGGAAGTTGTTACTCCAAGGATTTCATGTTCTAGAGTTGATTTTCTCAAGGAGGAGGGATGCAATTATGATCATCTAGCTTCATCAACCCTTGATTTAGATAATCTGTCTAAGTGTTTTCCTCGAACACTCTGGCTTCATAAAAATTAA 2721 0.4002 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGISKLSPLIDNGHWENGSGNAISLRFLSSSDACDAEDDGFLRSDNFSFKGRREQGTADFELDCRLLNSKMNYGELVNSIPEQQGISGNKSPSESCCSNHGEIGLDLASILPPSSHLKNGESCYLSNALSKLGRTDHSKSTRNSLRKNQVKPSEVMDDIASHVRSPCLSVRDAFSAHVTQDVDVLDNHHGCGISCCWSKSPKFRESNHYSEAEDLPLILQHVNETDFHGHGSMRNIGGEISPTLETPRSLSLKFRPKSFCDLVGQNMVGRSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALNCLTLEEQRPCGVCRECVLFFSGRSKDVKEVDSLRINRADKVKSLVKNACLPPASSCFKVYIIDECQLLHGETWASLLNSLENVSQHVVFVMITPDLDKLPRSAVSRAQRYHFVKIKDADIASRLEKICAEEGLYFEQCALNFIAAKSCGSLRDAEMMLDQLSLLGKKITISVVHELTGVVSDDELLDLLDLALSSDISNTIIRARELLRSRIDPLQLISQLANLIMDIVAGKCELGGSKIRKFYHSSLITAEADLQKLSRALRILSETEKQLRISKNQNTWFTAALLQLSSVEHSSVDINDTKLCMKAASDKDGDFCSTSSTESLKHLATCQSDDKSYRLGVQEDHKGTLDSIWYKATEICQSNRLKTFLRKHGKLSSICFNQGLAVAELEFHHRDYVARAEKSWKLIASSLQFILGCNIELRISYVPRTSDSKYAKLKRSSFNFFSCSRRILRKSLSSTKQGSESDYTDYTSQKPIMKDQTLTCYSDCGSRVPPLESYHGMEVVTTLRSCEGNLLRSGKREVVTPRISCSRVDFLKEEGCNYDHLASSTLDLDNLSKCFPRTLWLHKN 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi237g00002 906 CDD HLD_clamp_pol_III_gamma_tau 452 515 IPR045085 -
Gabi237g00002 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 502 IPR027417 -
Gabi237g00002 906 FunFam DNA polymerase III subunit gamma/tau 453 515 - -
Gabi237g00002 906 Gene3D - 453 515 - -
Gabi237g00002 906 NCBIfam DNA polymerase III subunit gamma/tau 279 626 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gabi237g00002 906 Gene3D - 516 630 - -
Gabi237g00002 906 SUPERFAMILY post-AAA+ oligomerization domain-like 517 627 IPR008921 GO:0003677|GO:0006260
Gabi237g00002 906 Gene3D - 273 450 IPR027417 -
Gabi237g00002 906 SMART AAA_5 311 454 IPR003593 GO:0016887
Gabi237g00002 906 Coils Coil 585 605 - -
Gabi237g00002 906 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 282 697 - -
Gabi237g00002 906 Pfam DNA polymerase III, delta subunit 295 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi237g00002 Gabi-Chr237 37216 40768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi237g00002 270 579 Core DNA Replication Machinery Family AT1G21690 24.522 5.14e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi237g00002 - - pcin:129308301 1152.89