Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2375g00030 ATGGCTTCCTCCAACAGACGACATTGGCCAAGCATGTTCAAGTCCAAGCCTAGCGACCCTCACCACCAATGGCAGCATGACATCAACTCGTCTTTCATGTCCACCGGTTGCCAAATAAGTCCTTACTCTCAAGGTGCAGGAGGTGAAGAAAGAAGTCCAGTACCAAAGCCAAGATGGAACCCAAAACCTGAGCAAATTAGGATTCTTGAAGCCATATTTAACTCTGGGATGGTGAACCCACCAAGGGATGAGATAAGGAAGATCCGGTTACAGTTACAAGAGTATGGCAATGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGTAAATCAAGGAGCAAGCAAAAGCTTCGCCACCTCCACAACTCAAAGAACAATAACCCAGAAGAACCCCAACAAAAACCTGCTTCTTCTTCTTCTTCTTCTCTCTCTCAAATCAAAGCACCTTCATCCTCATCCTCTTCCTCTGAGAAATCCTCTCCAAAAGAAATAACACCCTCCAAGGGATTTTCCATTGGATTATCAAACTTCAATGATGGGATGCCTCATTCTCCCACCCCTTCAGTGAACCAGGCTTATTTTCAGACCCACAATGACAAAACCAATTTGCTACCACCACCAACTGTGTCTTTCTCCTTCCCTGTGCACAATAATGGCCATGGAGTTGTTGTGGCTAATAATAATGCCATAACAACACAAGGGCTTTGCTTCTCTCAGTCCTCCAGTAGTATCATTCAAACTCAACCTCAACCTCAACCTCAAGTTCAACAAAATGTTGCTCCTTGTACTAGTGTGTTGCTTAGTGAGATCACTAACCATGGAACCTCCTCAAAGAAAGACCAAGATCAAGACAAGACCTTGAAGATAATGCACCGACATCCACAACTCACTTTTTCTCTCACTTCAACTGTTGTTCCTCCCATTACTGTTCCATCCGACATTACTCATCTTCAAGAGGTGATTCGGTGTGTGTCAGGTGTTGGTGAGGAGGCAGCTGGTACGACGAAATCTACAGTGTTGATAAACAACGTCGCATTCGAGGTTGCGGTGGGACCCTTCAACGTGCGTGAGGCCTTTGGGGATGACGCTGTTCTCATCCACTCCTCCGGCCAACCTGTCCTCACCGACGAGTGGGGCGTCACCCTTCACTCACTCCAGCATGGCGCATGTTATTATCTGATTTAA 1188 0.463 MASSNRRHWPSMFKSKPSDPHHQWQHDINSSFMSTGCQISPYSQGAGGEERSPVPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRLQLQEYGNVGDANVFYWFQNRKSRSKQKLRHLHNSKNNNPEEPQQKPASSSSSSLSQIKAPSSSSSSSEKSSPKEITPSKGFSIGLSNFNDGMPHSPTPSVNQAYFQTHNDKTNLLPPPTVSFSFPVHNNGHGVVVANNNAITTQGLCFSQSSSSIIQTQPQPQPQVQQNVAPCTSVLLSEITNHGTSSKKDQDQDKTLKIMHRHPQLTFSLTSTVVPPITVPSDITHLQEVIRCVSGVGEEAAGTTKSTVLINNVAFEVAVGPFNVREAFGDDAVLIHSSGQPVLTDEWGVTLHSLQHGACYYLI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2375g00030 395 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 395 IPR044557 GO:0003700|GO:0050793
Gabi2375g00030 395 MobiDBLite consensus disorder prediction 24 42 - -
Gabi2375g00030 395 Gene3D - 56 121 - -
Gabi2375g00030 395 MobiDBLite consensus disorder prediction 127 192 - -
Gabi2375g00030 395 MobiDBLite consensus disorder prediction 115 192 - -
Gabi2375g00030 395 MobiDBLite consensus disorder prediction 1 61 - -
Gabi2375g00030 395 ProSiteProfiles 'Homeobox' domain profile. 52 117 IPR001356 GO:0003677
Gabi2375g00030 395 SMART HOX_1 54 121 IPR001356 GO:0003677
Gabi2375g00030 395 CDD homeodomain 55 117 IPR001356 GO:0003677
Gabi2375g00030 395 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Gabi2375g00030 395 FunFam WUSCHEL-related homeobox 11 56 123 - -
Gabi2375g00030 395 Pfam Homeodomain 56 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2375g00030 Gabi-Chr2375 308988 310811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2375g00030 1 395 Wox Gene Family AT2G33880 42.431 6.24e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2375g00030 Homeodomain 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2375g00030 - - aprc:113852083 480.715