Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2375g00027 ATGGCTATTCATGCAGATTCTGAAGGGATTCTTGAGAATGTATGGGCTAAAATTATCAATAGTGACAGAGCATATGATAGAAGGGTTGATGCAGCAGAATTTCCCAACTCCTGGGAAGAACTTCCTAATCCTGATGGAAGAGATGGTTCTATGGAAATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAATTTTAAATGGTGTTCTACCTGCTGCAAGCAATACAGAAGATTCTGGTCATACCAATTTGGAAATTGGTAGTGCTACTAAATCCAATAAAATGATAGAAGATGCTGTGAGAGTAGATAAGGAAGTTGCAAAACACTATAGGGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCTAAGAAAGGTGCTAGAGTTTGGCTTGGAACATTTGAAACAGCTGAAGAAGCAGCTTTAGCTTATGATAAGGCTGCTTTGAGAATTAGAGGTCCAAAGGCATGTCTTAATTTCCCACTTGAGACAGTTTCACTTGATTTAGGAATTGAACAGAAAGGAACTGATCTCACTAGCCTTGCCTGTGGAACTTGTTTGGAGAATTGCTCTGCTTGCACATACACTAGGGACAGAGAAAATTCTTGCAAAACCCGGAAGAGGAAATCTGGAGGAAGGGAAGAATTTGTGGATATGGTGAATGAACAACCTGCAACAAAAAAAATGGTAAGCTTAGAAGGGGTGGTAGAAAATGAAGTAGATGTTTTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGACAATTTGCTTTCTTCTTGTTGA 828 0.3998 MAIHADSEGILENVWAKIINSDRAYDRRVDAAEFPNSWEELPNPDGRDGSMEILKRLPSLGRWISMGADFWEEILNGVLPAASNTEDSGHTNLEIGSATKSNKMIEDAVRVDKEVAKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKACLNFPLETVSLDLGIEQKGTDLTSLACGTCLENCSACTYTRDRENSCKTRKRKSGGREEFVDMVNEQPATKKMVSLEGVVENEVDVFVFQDLGSDYLDNLLSSC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2375g00027 275 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Gabi2375g00027 275 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Gabi2375g00027 275 PANTHER DNA-BINDING DOMAIN 104 239 IPR044808 GO:0003700|GO:0009873
Gabi2375g00027 275 SUPERFAMILY DNA-binding domain 118 178 IPR016177 GO:0003677
Gabi2375g00027 275 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Gabi2375g00027 275 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Gabi2375g00027 275 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Gabi2375g00027 275 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Gabi2375g00027 275 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Gabi2375g00027 275 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2375g00027 Gabi-Chr2375 273203 274030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2375g00027 10 274 AP2-EREBP Transcription Factor Family AT4G18450 36.721 9.43e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2375g00027 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2375g00027 - - gmx:100820226 346.665