Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2375g00019 ATGTCTTCCCTTTCCACTACAAAGTCCAAAGTTTCCATTGTTTGGCACTTCCTTCTTGCCCTCATATTCTTCTTTTCCTTCATTCTCTTTGGAGCTAAGGCCTCCAACGATGACATAGTTTTTTCCATTGGTGTAATCATTGACCTTAGCTCTCGTTCTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAACTACAACAACAGTTCAAAGTACCACCACAAACTGTCTCTACATTTCAAGGACTCCAAAGGGATGGCCCTGAAAGCTATTTCTATCGCTGAAGAGATGATTAAAATAAAGAAAGTGAAAGTGATAATTGGCATGCACTCATGGCAGGAAGCAGTTCTGGTAGCTGAGGTTGGAAATCAAGCTCAAGTTCCTGTTATTTCATTTGCTACACCAATCATCACACCTCCACTGTCATCATTTCGTTGGCCTTTCTTAGTACAAATGGCTAACAATCGTACTGCATACATAAAATGCATTTGTGATGTAGTTCATGCATACAATTGGCAAAGAGTTATAGTGATCTATGAAGATGATCCATATGGTGGTGATTATGGAATGTTAGCACTTCTATCTCAGGAAATCCAAAATGTTGGTTCACAGATTGAGCTCTCTTTGGCTCTCCCTCCATATTCTTCTTTGTCTCATCCAGATGGGGTAGTTCAGGTAGAGCTGCTGAAGCTGCTTAACACTCAATCCCGTGTCTTCATTGTTCTACAATCATCACTACCAATGGTAACTTGTTTGTTTGCTGAAGCTAAAAAGATGGCACTTGTGGATATGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTTATATGCTAGACTCTGTTAGTGACTCTGTCATTTCCTCCATGGAAGGTGTTTTGGGAATCAAGACTTATTACTTGCAGAGTAGTACTGATTATCAGAGTTTCCAAGTTCAGTTCAGAAAAAGCTTTCAGAAAGAAAATCCAGAAGAAGATAATCCCCAACCAGGATTTTATGCACTTCAAGCATATGATAGCATTTCAGTTGCCACACGTGCCATTGAGAAATTAAGAAATCATACTACGAGTAGCACTAAGATATTTCTAAAAGAAATGCTGTCTTGCAATTTCCTTGGCTTAAGTGGAAAAATAAGATTTGAAAAAGGGCAAACTTTGCCTTCTCCTATACTTAGGGTAGTAAGTGTGATTGGAAAGAGTTATAAAGAAATAGACTTTTGGACAGAAGAGTATGGATTCTCCAAGACCCTTTCCTTTGAGTTAGCTGGTCAAAAAGCTAAAATTAATAAGGTCTCAAGTACAATAGAAGGTTTGGGAGGTCCAATAATTTGGCCTGGGAATTTAATGAGGGCTCCAAGGGGTTGGAGAATGCCTAGAAGAGAAAAACCATTGAAAATTGGTGTTCCAAGATGGACTCCATTTGAGAAGTTTGTGAGGGTTGAATACAATGAAAACTCAAATCAGACAAAATATAGTGGATTCTGCATTGAAATTTTTGATAAGGTTCTAGATCAATTGCAGTATGACCTACCATATGAAATAGTTCCCTTTAATGGAACCTATACTGATCTGGTTTTTCTTGTCTACAACAAGACTTTGGATGCTGTTGTTGGTGACATAACCATTGTGGCTGACAGAATGCAATACGTGGATTTTACACTGCCATATGCAGAGTCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAGGACACAGCTTTGATTTTTATGAAGCCCTTTACGTGGGAAATGTGGATGGCTATTGTTTGCATCCTGGTCTGCACCATGTTCACAGTTTGGTACTTGGAGCGGGATTCCAATCCAGAATTCAGTGGTCCATGGAAGACTCAGATTAACATTGCTCTATGGTTTACTGTCTTTTCTCTATTCTTTGCACAAAGGGAGAAAATCTATAGCAACTTCACTCAAATGGTGATTGTTATGTGGCTCTTCCTTGGTTTGATCATAACCTCTAGCTACACAGCTAATCTATCCTCAATGCTCACAGTTCAACAATTGCAACCAAAAGTTAAAAACATTGAGTCACTAAAAAGGAGCAACTCCAAAATTGGTTTCTCAGGTGATCCTTTTGTGAGAAAATATCTGGAAAACGTTCTTCATTTCAAATCACAGAACATTATCAAAGTTAGTAGAAATTACAATTACACTGAGGAATTCAAAAGCAAGCGCATTGCAGCTGCCTTTATTGAAATCCCTTATGAAAAGGTATTCATCAGCATGAACTGCCAGGGATATTCTGCCTTCCCACCTACCAACAGATTTGGAGGGCTTGGCCTTTATGTTCCAGAAAGGTTCTCCAATTACTAG 2331 0.3887 MSSLSTTKSKVSIVWHFLLALIFFFSFILFGAKASNDDIVFSIGVIIDLSSRSGKEEKVAIELAAQNYNNSSKYHHKLSLHFKDSKGMALKAISIAEEMIKIKKVKVIIGMHSWQEAVLVAEVGNQAQVPVISFATPIITPPLSSFRWPFLVQMANNRTAYIKCICDVVHAYNWQRVIVIYEDDPYGGDYGMLALLSQEIQNVGSQIELSLALPPYSSLSHPDGVVQVELLKLLNTQSRVFIVLQSSLPMVTCLFAEAKKMALVDMETAWIVPESITYMLDSVSDSVISSMEGVLGIKTYYLQSSTDYQSFQVQFRKSFQKENPEEDNPQPGFYALQAYDSISVATRAIEKLRNHTTSSTKIFLKEMLSCNFLGLSGKIRFEKGQTLPSPILRVVSVIGKSYKEIDFWTEEYGFSKTLSFELAGQKAKINKVSSTIEGLGGPIIWPGNLMRAPRGWRMPRREKPLKIGVPRWTPFEKFVRVEYNENSNQTKYSGFCIEIFDKVLDQLQYDLPYEIVPFNGTYTDLVFLVYNKTLDAVVGDITIVADRMQYVDFTLPYAESGLSMIVPAKSEDTALIFMKPFTWEMWMAIVCILVCTMFTVWYLERDSNPEFSGPWKTQINIALWFTVFSLFFAQREKIYSNFTQMVIVMWLFLGLIITSSYTANLSSMLTVQQLQPKVKNIESLKRSNSKIGFSGDPFVRKYLENVLHFKSQNIIKVSRNYNYTEEFKSKRIAAAFIEIPYEKVFISMNCQGYSAFPPTNRFGGLGLYVPERFSNY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2375g00019 776 Pfam Ligand-gated ion channel 582 716 IPR001320 GO:0015276|GO:0016020
Gabi2375g00019 776 Gene3D - 37 161 - -
Gabi2375g00019 776 Gene3D - 461 573 - -
Gabi2375g00019 776 PIRSF IGluLR_plant 12 774 IPR017103 -
Gabi2375g00019 776 SUPERFAMILY Periplasmic binding protein-like I 40 456 IPR028082 -
Gabi2375g00019 776 FunFam Glutamate receptor 464 574 - -
Gabi2375g00019 776 Gene3D - 574 712 - -
Gabi2375g00019 776 SUPERFAMILY Periplasmic binding protein-like II 443 770 - -
Gabi2375g00019 776 Gene3D - 162 328 - -
Gabi2375g00019 776 Pfam Bacterial extracellular solute-binding proteins, family 3 486 738 IPR001638 -
Gabi2375g00019 776 FunFam Glutamate receptor 574 712 - -
Gabi2375g00019 776 SMART GluR_14 466 725 IPR001320 GO:0015276|GO:0016020
Gabi2375g00019 776 Pfam Receptor family ligand binding region 58 395 IPR001828 -
Gabi2375g00019 776 CDD PBP1_GABAb_receptor_plant 42 418 IPR044440 -
Gabi2375g00019 776 FunFam Glutamate receptor 161 329 - -
Gabi2375g00019 776 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 770 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2375g00019 Gabi-Chr2375 175297 179106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2375g00019 1 772 Ion Channels AT2G29120 31.297 7.63e-125 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2375g00019 - - qsa:O6P43_031906 933.71