Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2372g00001 ATGGCTTTTGGTAGAAGGATTTTTGCAGCAAGAACTCTCGTCAGATCAGATTGTATTCTATCGGGTTTTCAAAGTCGTTTTCCAAGTTTAGATGCGGCAGACATAAAACATTTCTTGGCGGTGCAAGGTGTTAGTGGCAATACTAGAAACTTCATTACATGGGATGACTTCATAGTGGATGAGCACAGTCTCTCCTCCGCTGTTAGTGGTAGAGTTATTGTGGTAGATCAAAGTGGTAACGGAGATTCACCAACTGTTCAAGGGGCTGTTGATATGATTCCAGAAGACAATACAGAAAGAGTGAAGATATATATTTATCCAGGAACTTACAGAGAACGAGTGCACGTGCCGAGAAGCAAGCCGTTTATTTCATTTATAGGTAAACCTAACATAACAGTCAATGGCAATGAACTAAATGTAACGGCCAATGGCAATGCACTAAATGTAACAGACATTGCCAATGCCATACCTATTATTACAAATAGTACTAAGGCCTCAGACAAAGGCTCAGATGGGCAAGAAATGGGAACAGATAGTACAGCAACTGTATGGGTAGAATCTGATTTCTTCTGTGCAACAACTCTTACTATTGAGAATTTGGTAGGTAAAGATGAAGATAAACGCCAAGCAGTAGCGTTGCGTGTAGATGGGGATAAAGTTGTATTCTACCGAGTTAGGCTTGTGGGGGAACAGGACACTCTCCTAGATAACAATGGAACCCATTATTTCTACCGAAGTTACATTCAAGGATCCGTTGACTTTATATGTGGCAATGCAAAATCATTGTTCCATGAGTGTTTACTATACTCTGTGGCTGGGTTTTGGGGAGCAATTGCAGCTCATCACAGGGATTCAGCAGATGAAGATACCGGATTTTCATTTGTTGGTTGCACAATTAATGGAACCGGTAGTATCTTCCTTGGGAGAGCTTGGGGGGAATATGCAACGACAATATATTCATACTGTGTCATGGACGATATCATTAACCCCATTGGATGGAGCGATTGGGACATTCCATCTAGACAGAGTACTGCGATGTTTGGGGAATACGAGTGTTCAGGAAAAGGATCGAATAGAACTGAGAGGGTAGAATGGTCAAAAGCTTTAAGCAGCGAGGAAGCAAGGCCTTTCCTGGGCAGAGACTACATTAATGGAGATAGATGGCTTAGATTATGA 1176 0.4175 MAFGRRIFAARTLVRSDCILSGFQSRFPSLDAADIKHFLAVQGVSGNTRNFITWDDFIVDEHSLSSAVSGRVIVVDQSGNGDSPTVQGAVDMIPEDNTERVKIYIYPGTYRERVHVPRSKPFISFIGKPNITVNGNELNVTANGNALNVTDIANAIPIITNSTKASDKGSDGQEMGTDSTATVWVESDFFCATTLTIENLVGKDEDKRQAVALRVDGDKVVFYRVRLVGEQDTLLDNNGTHYFYRSYIQGSVDFICGNAKSLFHECLLYSVAGFWGAIAAHHRDSADEDTGFSFVGCTINGTGSIFLGRAWGEYATTIYSYCVMDDIINPIGWSDWDIPSRQSTAMFGEYECSGKGSNRTERVEWSKALSSEEARPFLGRDYINGDRWLRL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2372g00001 391 Pfam Pectinesterase 73 143 IPR000070 GO:0030599|GO:0042545
Gabi2372g00001 391 Pfam Pectinesterase 166 386 IPR000070 GO:0030599|GO:0042545
Gabi2372g00001 391 FunFam Pectinesterase 68 391 - -
Gabi2372g00001 391 SUPERFAMILY Pectin lyase-like 66 389 IPR011050 -
Gabi2372g00001 391 Gene3D - 71 391 IPR012334 -
Gabi2372g00001 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2372g00001 Gabi-Chr2372 11260 18756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2372g00001 35 342 Carbohydrate Esterase AT5G55590 51.952 2.08e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2372g00001 K01051 - gmx:100812850 597.43